PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_56.g248.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 650aa    MW: 71103.2 Da    PI: 9.3958
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_56.g248.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.7e-16262296135
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C nCgtt+TplWR+++  n+  CnaCG+yy+ +g+
  model.Picochlorum_contig_56.g248.t1 262 CYNCGTTSTPLWRKDKTLNIIMCNACGIYYKNHGR 296
                                          *********************************97 PP
2GATA50.52.9e-16477511135
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C+nCgt +TplWR+++d    LCnaCG+y + +g+
  model.Picochlorum_contig_56.g248.t1 477 CENCGTQQTPLWRKDKDTGVILCNACGIYRKTHGV 511
                                          ****************66666************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011418.821256312IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-17256307IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-19258306IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.09E-15258307No hitNo description
CDDcd002029.64E-20261313No hitNo description
PfamPF003201.3E-13262296IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-20470523IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15470524No hitNo description
PROSITE profilePS5011421.142471525IPR000679Zinc finger, GATA-type
SMARTSM004016.9E-17471522IPR000679Zinc finger, GATA-type
CDDcd002029.65E-19476520No hitNo description
PfamPF003203.8E-13477511IPR000679Zinc finger, GATA-type
PROSITE patternPS003440477502IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MTTSHPIEEQ AGGQRGEVGH DMLINNHVAQ VVEEGGEERN NNNNNEGASL LLDDAQKQMF  60
MLAVFTFGTS NVKKISQVMG VSHERAGEQR VAEYLSHISG TDELPYGHDE RLRGMTWDML  120
LSKRTRQLSI RFLMNANRLK RVQKMADKIL TKEYAQAVSS ILVLFKDGYV DAENFVESLV  180
IMLGRQGTVK ALDLPEFLVN MKDVEAEQEG MMSPTSKKRG LSALFVEASS RPEKQVKPEP  240
EHVAQPGLVA QERGNEPQAK VCYNCGTTST PLWRKDKTLN IIMCNACGIY YKNHGRHRPV  300
SLSQSSPGKS AKKETLPGGS ITAKMLGSGG AHQAAHAALR ALVAQDVPSQ EPAQRASRRS  360
SRPRKPRSLE GTDADSDFSG VVSSEESTEK MRGELIDRLI TTVPTGFDVD GAIKGLWSLK  420
QAAMKDEVTG ENWGTVRLYA DVGEGDKKEA GSTHVARRES ATYHSGPNTS KNATQTCENC  480
GTQQTPLWRK DKDTGVILCN ACGIYRKTHG VNRPLTTPKP VKAPRDEPMV ATFFKGPRSE  540
RSAASMERME TLRQIGHSAF DTRPIMRSPK VPRRPAEGYK LHDSYPRAAH DVIASAYGLS  600
GSQSGASQTF SPPFLSSTGF KGQYSWIPPP VSSGQNVPYG APAQKHTHS*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4830810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.12e-07GATA transcription factor 14