PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_4.g201.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 495aa    MW: 53149.2 Da    PI: 5.9667
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_4.g201.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-09399451247
                                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
                     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                                         ++W+ eE + lvd+v+  G g W+ I r          ++Rt+ ++k++w+++
  model.Picochlorum_contig_4.g201.t1 399 NPWSLEETLALVDGVRATGVGKWAEIKRLSIpgiaevlQNRTPVDLKDKWRNL 451
                                         69**************************99889******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.399393456IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-11395453IPR009057Homeodomain-like
SuperFamilySSF466893.2E-13396454IPR009057Homeodomain-like
SMARTSM007174.5E-7397454IPR001005SANT/Myb domain
PfamPF002493.9E-6399451IPR001005SANT/Myb domain
CDDcd116601.31E-17400453No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MTDHMQQDDF LAELIQGVEG NPDWLDSLNE GLQGTQLDDM SFGDSGHSLK RSGSSPAFAD  60
AAVFGHSDHS LRSTTPVAIR PMVPNKTDDF SSLESNQSMF DINGFSSVPE DGLLGAHASY  120
RRGHMKNGMP PVHPLGGRSS GSSVTTNRSN SMPSFTPTVT VPAQGGHWAW VPEPGSDGQP  180
TVPPPFQPPP HLNQVPVRSG RLPLPLSAEE NDLNLLDVDI FENFDVLEMA NTLVLEQGGT  240
DGSQNRVHSR VHGSCPLPTL LEDTLSVEES GSESTMQNSL GHSGDGSQEM VPEQVNPSGR  300
VRSRPSSIPV PGARSMPLKA QRPSRSQSSP HLASSLLASS CPTQGERPVR GAARRSVHIA  360
AASLSDAADD QDPEYIDGLE RSHSIRSTGG TNSGKKKHNP WSLEETLALV DGVRATGVGK  420
WAEIKRLSIP GIAEVLQNRT PVDLKDKWRN LTRIAKLPKA SLKARLQRGQ SELSLETMLL  480
VKDLMDNAQP MDRA*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.22e-14TRF-like 3