PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_34.g80.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family CPP
Protein Properties Length: 720aa    MW: 76346.6 Da    PI: 10.0515
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_34.g80.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73.1e-15475511541
                                 TCR   5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                         +C+CkkskClk+YCeCf+a+ +C+ +C+C +C+Nk e
  model.Picochlorum_contig_34.g80.t1 475 RCKCKKSKCLKLYCECFKARGYCGGDCSCVGCSNKAE 511
                                         7*********************************976 PP
2TCR52.69.1e-17552592141
                                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                         +++kgCnCkkskC+kkYCeCf+ag+ C+++CkC++C N++ 
  model.Picochlorum_contig_34.g80.t1 552 QHRKGCNCKKSKCQKKYCECFQAGVPCGDHCKCNGCANTSA 592
                                         589***********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.3E-13471512IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.928472592IPR005172CRC domain
PfamPF036382.7E-11475509IPR005172CRC domain
SMARTSM011141.7E-16552593IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12555590IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MSATVEAQRD SPSPSPRRNT AEGIFTTPER AKKQKINCGQ HEGVKIEGSP NFQALFRDLP  60
DLTPPRKNVS YSAYTGQSPS VAEFGFPRLT EGSPDRQRLG VEFLQRSTPS TIVQSPPSFV  120
SPRSSLSMLP PLPIFQPSPM RGNSQASTFL SPGDKDARRL SDASEYQRFS LSPGLQKVGQ  180
GNVSGSSEGK GFTSAFADIL DGHSRVSPKA FGGHGGNSSG RKDRDLIAGS WKSTETRGHL  240
NDGSNSPLQL RGHVSTQDRG TSTEYNGSAR VASRKRSLTF SDSITSPNRN GVKTFVASPG  300
PLHLALGGVE DSVDLLPIHP LRDSSREVSP NKPIPPSNTN SKSPEGVQRV SKGLDALAQS  360
PNGARLGIIR REDIIDSPAV KEATEAAVAK AMRANAEVTN QARNKAYASP KRPQRAAAAG  420
VAVAAAAAAL GSNGIVKGRK ASSFSAQQVS RSGINSLFAS TSIPGMSSND SGPVRCKCKK  480
SKCLKLYCEC FKARGYCGGD CSCVGCSNKA EFTDEIKKAR ESILTRNPQA FAEKIAETFV  540
PSQNGMLPTG AQHRKGCNCK KSKCQKKYCE CFQAGVPCGD HCKCNGCANT SAHPSAIMES  600
QKDVQAALLG LRHQSVSPVV QEMLLRSTRG NAGASTAVRE LMYGQAGRAR SHFQAKSKGQ  660
AQGTPQQHLV PIAWPLDSGT PGAVRSKFNA INTDGVIEGL TPVVTTAAID SKEENDDNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2047659414125Protein lin-54 homolog
5fd3_B2e-2047659414125Protein lin-54 homolog
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.13e-25Tesmin/TSO1-like CXC domain-containing protein