PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_34.g77.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

Protein Properties

Length: 295aa MW: 32623.7 Da PI: 10.059

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_34.g77.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.7e-31	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+lrWt eLH+rFveav++LGG+ kAtPk++ +m+v+gL ++hvkSHLQkYRl model.Picochlorum_contig_34.g77.t1 16 KPQLRWTIELHKRFVEAVQRLGGPAKATPKQVQIVMNVEGLQIAHVKSHLQKYRL 70 799***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-27	14	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-13	15	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-23	16	70	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-7	20	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSQEGDVRAR DRDSGKPQLR WTIELHKRFV EAVQRLGGPA KATPKQVQIV MNVEGLQIAH 60 VKSHLQKYRL SLGIQSQHHT SPTSLDEGKQ HAHPSVRSQQ GGPSVSTGFE LHRMDQKTLA 120 DFGQKDFGTF PNKFGPSNLQ EYFKSDAHAQ RRSGMDLPGG LELLSTLLDS GKSNDQGHSN 180 PLAEGHIGSS RQILPDSSVE KVNRLVREIM TLLSRQKSLE QELSLISGSV QKYLEQIQYI 240 LTTMVLSQVS SQSKTKKEGR QEEGSKNNMN QALQNIQTSL AGMSSIQFSQ EGKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	15	69	1	55	Protein PHOSPHATE STARVATION RESPONSE 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	3e-21	G2-like family protein