PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_311.g616.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

MYB_related

Protein Properties

Length: 795aa MW: 91327.4 Da PI: 7.3531

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_311.g616.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	409	451	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 T++Ed++l++ v++ G+ W++ a+ kgRt+ +++ r+ k+ model.Picochlorum_contig_311.g616.t1 409 TEDEDLRLLKSVEEVGKC-WDALAASGTfKGRTAASLRQRYSKL 451 9*************99.99877799**********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	17	263	326	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	4.67	330	378	IPR017877	Myb-like domain
SMART	SM00717	74	334	396	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.737	400	452	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.87E-6	401	452	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-8	402	452	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-4	404	454	IPR001005	SANT/Myb domain
CDD	cd00167	8.27E-4	408	452	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MEEFYCCQEN FEHLFSWRHE ISGQDGGVDV SGWAACRWVF SMGPREEEAS LNNRLITFYF 60 QPVASSHSLP QQPINNNNND DDDVTLTYRE TDSLYDETLE HSSGATVEVV DLTGSQSESH 120 VPCLEDDLAN YSPRTKTCKE NQENTAPQVA YGPREAKRLK LLNNDSTCLF SGERCCDPSP 180 QKICPDAVKS TPMQGRLTEV SVNLGVPFAP LEKSGDRVHG DAQGNSITDA PSRYAQGKKD 240 LEEAVEEKRN ILHAVYGEEY KSKKGKYDED EENLIRAAVA AFLKDGPERE YIDTKWGSLR 300 AYCSKYLMPW RNRESIKKKI KYVREQQSTE SPSKRREWTS EQKTLLLSLS QNEKYHINKL 360 GHIDWAKVGK DYFPEIDRPC TKLPIVLRNY KQHLKEHSRA YSVKSAHYTE DEDLRLLKSV 420 EEVGKCWDAL AASGTFKGRT AASLRQRYSK LIGSYTKTNP VCNKCNTMTA SYGYDGEGAT 480 TNRLERCNAC KEPDMVYLLT STCTHEGCTA IAWYGLPRDG KRILCSSHYD QTKHVEITRA 540 CQRCLKECQQ NLADGPVYRR FEGHLCARHY LDENESNLPL ETIQCIQRYI SSGYSGDNTG 600 RKVKEDMASA WLNNNVSDVF NIRRESLGRW YPFKNNTTGR AYRIDFCFAR KENSAHRIAA 660 ALEVDEWQHM HYCMLQEARR TRVITHDWLA KDIPFLLIRM NTDHYVLKGT HQEGAFFKKA 720 SVQRNESEMN KRMTMVKKNL EKFFARFDRS STYSENKHAP GYMVKICFDG DSVEQYYQAN 780 RETGAWERIK ECPF*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MEEFYCCQEN FEHLFSWRHE ISGQDGGVDV SGWAACRWVF SMGPREEEAS LNNRLITFYF  60
QPVASSHSLP QQPINNNNND DDDVTLTYRE TDSLYDETLE HSSGATVEVV DLTGSQSESH  120
VPCLEDDLAN YSPRTKTCKE NQENTAPQVA YGPREAKRLK LLNNDSTCLF SGERCCDPSP  180
QKICPDAVKS TPMQGRLTEV SVNLGVPFAP LEKSGDRVHG DAQGNSITDA PSRYAQGKKD  240
LEEAVEEKRN ILHAVYGEEY KSKKGKYDED EENLIRAAVA AFLKDGPERE YIDTKWGSLR  300
AYCSKYLMPW RNRESIKKKI KYVREQQSTE SPSKRREWTS EQKTLLLSLS QNEKYHINKL  360
GHIDWAKVGK DYFPEIDRPC TKLPIVLRNY KQHLKEHSRA YSVKSAHYTE DEDLRLLKSV  420
EEVGKCWDAL AASGTFKGRT AASLRQRYSK LIGSYTKTNP VCNKCNTMTA SYGYDGEGAT  480
TNRLERCNAC KEPDMVYLLT STCTHEGCTA IAWYGLPRDG KRILCSSHYD QTKHVEITRA  540
CQRCLKECQQ NLADGPVYRR FEGHLCARHY LDENESNLPL ETIQCIQRYI SSGYSGDNTG  600
RKVKEDMASA WLNNNVSDVF NIRRESLGRW YPFKNNTTGR AYRIDFCFAR KENSAHRIAA  660
ALEVDEWQHM HYCMLQEARR TRVITHDWLA KDIPFLLIRM NTDHYVLKGT HQEGAFFKKA  720
SVQRNESEMN KRMTMVKKNL EKFFARFDRS STYSENKHAP GYMVKICFDG DSVEQYYQAN  780
RETGAWERIK ECPF*