PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_272.g956.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 371aa    MW: 40740.1 Da    PI: 8.39
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_272.g956.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-075882126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                          +k+ +C +f + G+C++G++CkF+H+
  model.Picochlorum_contig_272.g956.t1 58 PKEQICFDFTK-GQCRRGENCKFSHD 82
                                          6888999999*.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-65783IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8925884IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-55882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-65982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-55982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5391118IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-492117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-593122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-496122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.013138164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5139166IPR000571Zinc finger, CCCH-type
SMARTSM003563.1187212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.502191213IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAMETGRKNS FPSHEKQGGL EGYAAVAAAG IGHHEPSPVG SQTQRQRANA SSKKSVVPKE  60
QICFDFTKGQ CRRGENCKFS HDVGYIIEVN SQEKGICFDF LKGTCTRGVM CRFSHDLNNL  120
KPMIDQSTPK KETIGKGKKK APICYDFVKN MCSKGQHCKY SHDYSSLFQQ VHKRSSTGEV  180
EQNPNTVCSD VCVDYLRGQC RHGDGCSLYH VGVSGQHSDI PASAGLCRVQ THDSNQETLE  240
NLLARLKRAQ LQDDLMVPAS GVSYPPPSMP SQGALLMDAY AKDSANRLMP MNNTMAMSPP  300
VTHTEKMAMK QYLAKEHEAR DSPTIGAGWH GGLAHAPRQS LFGSTEDSMQ RHGQSLHEFL  360
AVQSIWSQKC *
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314