PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_27.g80.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | ERF | ||||||||
Protein Properties | Length: 594aa MW: 65338.6 Da PI: 7.4284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.5 | 6.9e-08 | 56 | 103 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +++kGV wdkk +rW+A+++ ++ ++g++ +Aaka ++a ++++ model.Picochlorum_contig_27.g80.t1 56 TRFKGVQWDKKGKRWRARLHT------DRTRHVGYYSDDVQAAKAWDQAFLRYN 103 589***************777......5999*******99********998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.639 | 57 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.065 | 57 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-7 | 57 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.81 | 136 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-5 | 136 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-9 | 137 | 192 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-9 | 138 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MEPNGAESTA GQTVPEAVEP NRSFRRDARP HDRVGQNCDG ILEKQDQVGD CEGPITRFKG 60 VQWDKKGKRW RARLHTDRTR HVGYYSDDVQ AAKAWDQAFL RYNSESSVVD KLNFPEESYA 120 AFKKFISTTG DVDLCDLRGV TSVTHGQFRS VILQNRVQKT IGTFSTARQA AVAYDWKAIS 180 LQGWGALTNF PIKSYQMEYV RNGGISPLDR TVLPPLPNLS NTTPSGIQQS LMLQMQNPMY 240 PGGMPPDALQ QVLHQSPDPM ASPEYQEHIR QLCTILSIPP EHLVANVKSQ VPEKKATQES 300 VAPVQRTLVS QVADNQWRAS ITVDLGVFPS KEKAEIACKR SRLIADGFGS ATDPSNILEH 360 FEAIKSRRNE KVNSINEKDG SYYAKLRIKQ RAFELGPYAT FEEAAVAYDK YKLVIDGMVA 420 DTFNSLVHIL LPEDDATMLL EALNVKPTTI SKQQQVPVQT PAAGMTYTHP TLLRVGSMSN 480 IVAPLPVSGV SIPRVGSQTS LQEGAIELQK QLEEIESSIE GIHGHKRTKI GGQGTPEPQQ 540 HTDSATPSMR TDSQNHASMA AGQLSNPPIA VDNKGGSFPL PAYPKRSNNN AQD* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5740 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 5e-10 | AP2 family protein |