PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_196.g922.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 45497.5 Da PI: 6.7815 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.5e-12 | 335 | 358 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+ +tGtCk+G+ C+F H+p model.Picochlorum_contig_196.g922.t2 335 TPCDFYIKTGTCKFGADCRFDHPP 358 59********************96 PP | |||||||
2 | zf-CCCH | 29 | 1.8e-09 | 373 | 398 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f rt tCkyG+ Ck+ H+ model.Picochlorum_contig_196.g922.t2 373 PGEPKCNHFERTMTCKYGAACKYDHS 398 57899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50011 | 15.058 | 1 | 118 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 1.5E-8 | 2 | 117 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 8.1E-15 | 2 | 119 | No hit | No description |
SuperFamily | SSF56112 | 2.56E-15 | 2 | 137 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS51392 | 34.28 | 121 | 254 | IPR010513 | KEN domain |
CDD | cd10422 | 7.89E-53 | 124 | 252 | No hit | No description |
Pfam | PF06479 | 1.6E-38 | 124 | 252 | IPR010513 | KEN domain |
SMART | SM00580 | 1.5E-15 | 185 | 239 | IPR018997 | PUB domain |
SMART | SM00356 | 3.0E-5 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 334 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 335 | 358 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 336 | 358 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0049 | 372 | 399 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.394 | 372 | 400 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-7 | 374 | 398 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 378 | 399 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0004540 | Molecular Function | ribonuclease activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGLSKKLVDN QASFETLGAG GSPGWQAPEQ LTVRRGGTAR LTASVDVFSS GLLVHYCLTG 60 GKHPYGESYD RDNAILKDEK DLSAIQGIPC AENLISAMLS MDAANRPTSE EILQHPMWWT 120 SHDRLSFLSD FSDRVEVENR AEDESAFIAL ESLSPWAIGH PSGWLDALDQ LLVDNLVKYR 180 KYDSQSLRDL LRVIRNKYSH YRELPKDLQK VLGDIPDGFL SYFERRFPKL VTTCFSFALK 240 WYSGDAIFEK YFDSAKAKGL LDTCAPPQMR DPEVREAALE EARARIEAKK KEMRTLLQDH 300 AQQMVNNGTP NHTGRTPEKP QYQPSPLLPR RPWMTPCDFY IKTGTCKFGA DCRFDHPPEH 360 QVPLNEFGLP IRPGEPKCNH FERTMTCKYG AACKYDHSLS TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3fbv_B | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_C | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_D | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_E | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_F | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_G | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_H | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_I | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_J | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_K | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_L | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_M | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_N | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_A | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_B | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_C | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_D | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_E | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_F | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_G | 1e-54 | 1 | 254 | 190 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2824 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.1 | 2e-19 | zinc finger nuclease 3 |