PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_196.g922.t2
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 403aa    MW: 45497.5 Da    PI: 6.7815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_196.g922.t2genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.5e-12335358427
                                           ---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                            +C+f+ +tGtCk+G+ C+F H+p
  model.Picochlorum_contig_196.g922.t2 335 TPCDFYIKTGTCKFGADCRFDHPP 358
                                           59********************96 PP
2zf-CCCH291.8e-09373398126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ++++ C++f rt tCkyG+ Ck+ H+
  model.Picochlorum_contig_196.g922.t2 373 PGEPKCNHFERTMTCKYGAACKYDHS 398
                                           57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5001115.0581118IPR000719Protein kinase domain
PfamPF000691.5E-82117IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.108.1E-152119No hitNo description
SuperFamilySSF561122.56E-152137IPR011009Protein kinase-like domain
PROSITE profilePS5139234.28121254IPR010513KEN domain
CDDcd104227.89E-53124252No hitNo description
PfamPF064791.6E-38124252IPR010513KEN domain
SMARTSM005801.5E-15185239IPR018997PUB domain
SMARTSM003563.0E-5331358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6334359IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8335358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408336359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5336358IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049372399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.394372400IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7374398IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4378399IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006468Biological Processprotein phosphorylation
GO:0004540Molecular Functionribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGLSKKLVDN QASFETLGAG GSPGWQAPEQ LTVRRGGTAR LTASVDVFSS GLLVHYCLTG  60
GKHPYGESYD RDNAILKDEK DLSAIQGIPC AENLISAMLS MDAANRPTSE EILQHPMWWT  120
SHDRLSFLSD FSDRVEVENR AEDESAFIAL ESLSPWAIGH PSGWLDALDQ LLVDNLVKYR  180
KYDSQSLRDL LRVIRNKYSH YRELPKDLQK VLGDIPDGFL SYFERRFPKL VTTCFSFALK  240
WYSGDAIFEK YFDSAKAKGL LDTCAPPQMR DPEVREAALE EARARIEAKK KEMRTLLQDH  300
AQQMVNNGTP NHTGRTPEKP QYQPSPLLPR RPWMTPCDFY IKTGTCKFGA DCRFDHPPEH  360
QVPLNEFGLP IRPGEPKCNH FERTMTCKYG AACKYDHSLS TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-541254190448Serine/threonine-protein kinase/endoribonuclease IRE1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.12e-19zinc finger nuclease 3