PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_196.g922.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C3H | ||||||||
Protein Properties | Length: 1074aa MW: 119751 Da PI: 5.3409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3e-11 | 1006 | 1029 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+ +tGtCk+G+ C+F H+p model.Picochlorum_contig_196.g922.t1 1006 TPCDFYIKTGTCKFGADCRFDHPP 1029 59********************96 PP | |||||||
2 | zf-CCCH | 27.5 | 5.5e-09 | 1044 | 1069 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f rt tCkyG+ Ck+ H+ model.Picochlorum_contig_196.g922.t1 1044 PGEPKCNHFERTMTCKYGAACKYDHS 1069 57899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50998 | 2.55E-9 | 89 | 163 | IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily |
Gene3D | G3DSA:2.140.10.10 | 3.2E-7 | 93 | 319 | IPR027295 | Quinoprotein alcohol dehydrogenase-like domain |
Pfam | PF01011 | 5.8E-5 | 95 | 123 | IPR002372 | Pyrrolo-quinoline quinone repeat |
SuperFamily | SSF50998 | 2.55E-9 | 192 | 332 | IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily |
Gene3D | G3DSA:3.30.200.20 | 2.5E-17 | 498 | 639 | No hit | No description |
PROSITE profile | PS50011 | 35.736 | 523 | 789 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 3.0E-37 | 523 | 789 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 1.21E-52 | 526 | 790 | IPR011009 | Protein kinase-like domain |
Pfam | PF00069 | 1.7E-38 | 526 | 787 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 5.6E-36 | 640 | 820 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 649 | 661 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS51392 | 34.28 | 792 | 925 | IPR010513 | KEN domain |
Pfam | PF06479 | 8.0E-38 | 795 | 923 | IPR010513 | KEN domain |
CDD | cd10422 | 1.31E-50 | 795 | 923 | No hit | No description |
SMART | SM00580 | 1.5E-15 | 856 | 910 | IPR018997 | PUB domain |
SMART | SM00356 | 3.0E-5 | 1002 | 1029 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 1005 | 1030 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-8 | 1006 | 1029 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 1007 | 1029 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 1007 | 1030 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.394 | 1043 | 1071 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0049 | 1043 | 1070 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 1045 | 1069 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000394 | Biological Process | RNA splicing, via endonucleolytic cleavage and ligation | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006987 | Biological Process | activation of signaling protein activity involved in unfolded protein response | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0034263 | Biological Process | autophagy in response to ER overload | ||||
GO:0046777 | Biological Process | protein autophosphorylation | ||||
GO:0042406 | Cellular Component | extrinsic component of endoplasmic reticulum membrane | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1074 aa Download sequence Send to blast |
MGARGRSFSY FSSHTFLVWW LLLFLLNSRH VFVRSSVDDE HTMPIRNIDE LMDVLGDEQE 60 IDVDPRAALQ SDVLMEALGK HQVPQVEHHL LVSLADGHIV ALDEDTGRRV WSIDTGSPLV 120 ASSTHAERRG GDDVHSGEYE GIFPSTDGSL YTYSLDEEGS PHVQKLPMTV KDLVDASPSP 180 TPEGAMMLGS QQTVVFIIDV QRGIVLKTIK GDDTDVFMYL RGHDGTTPVD EDFFQDGVEV 240 KTIVISRKDF IIRSIHPSFG EQWNVTWSQL DKMSMVELHG HGAEVDRDDM KLVLAPDYSL 300 KRFDGETGAE MWSVSFPIPP TVAYPSSGKA IDLLDATKKM LNMVVDRKAS MTALVEQGHL 360 LEVSETLVVG EMEGKLFGLR APYFKKSDRA RVTEDSAIVG GEEEEEHALV PAGKTVGRVC 420 KDKHDVCRIP VGFYPLVENA SETRLLFLPK CSADDVEDCE DDSDVVVPSR MRRAVVVGST 480 VTTLLVTVFL FKKRRGVEEP SSSISQQKAV ELPNGNTKVG RLEVSKEVLG YGSGGTAVYE 540 GILDGRKVAV KRMLKQFVDL AKQEIEALID SDEHPNVVRC FALEEDGEFI YLALERCDMS 600 LADALETSKM KNMRFRKVDA DGSIVNTPLA YQVARDIVEG VNAVHSRGIV HRDLKPHNVL 660 LNSSGRAKLS DMGLSKKLVD NQASFETLGA GGSPGWQAPE QLTVRRGGTA RLTASVDVFS 720 SGLLVHYCLT GGKHPYGESY DRDNAILKDE KDLSAIQGIP CAENLISAML SMDAANRPTS 780 EEILQHPMWW TSHDRLSFLS DFSDRVEVEN RAEDESAFIA LESLSPWAIG HPSGWLDALD 840 QLLVDNLVKY RKYDSQSLRD LLRVIRNKYS HYRELPKDLQ KVLGDIPDGF LSYFERRFPK 900 LVTTCFSFAL KWYSGDAIFE KYFDSAKAKG LLDTCAPPQM RDPEVREAAL EEARARIEAK 960 KKEMRTLLQD HAQQMVNNGT PNHTGRTPEK PQYQPSPLLP RRPWMTPCDF YIKTGTCKFG 1020 ADCRFDHPPE HQVPLNEFGL PIRPGEPKCN HFERTMTCKY GAACKYDHSL STT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3fbv_B | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_C | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_D | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_E | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_F | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_G | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_H | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_I | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_J | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_K | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_L | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_M | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_N | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_A | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_B | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_C | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_D | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_E | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_F | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_G | 5e-95 | 492 | 925 | 4 | 448 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2824 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 6e-19 | zinc finger nuclease 3 |