PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_18.g44.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 738aa    MW: 81577.7 Da    PI: 9.066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_18.g44.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07383433347
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
                     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                                         +W+  Ed+ll+  v+++G + W+++++ +         +R + qc++r++++
  model.Picochlorum_contig_18.g44.t1 383 SWSRNEDDLLLAIVHEFGVN-WTLVSEVLSrslslqgIHRPPQQCRHRFRQL 433
                                         7*****************99.**************9989**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075295.8E-675112IPR014012Helicase/SANT-associated domain
SuperFamilySSF466894.57E-8360435IPR009057Homeodomain-like
SMARTSM007173.8E-7380436IPR001005SANT/Myb domain
PfamPF002491.2E-7383433IPR001005SANT/Myb domain
CDDcd001673.61E-6383434No hitNo description
Gene3DG3DSA:1.10.10.605.8E-8383435IPR009057Homeodomain-like
PROSITE profilePS500908.455383434IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAKAKNEQQQ QQQGGASEKE ANKKSNGVAK DVEMAKEDGD MSQVRKEEDA ILEQGEEIAS  60
RRALIAQAFK PPCLEPERPL SHWSHVLGEM KWLAVDVAQE RLWKQSVAFA IAVEIGKMQG  120
DFGLKQPPED CRQFSNEIKQ LKLEAAKAAG QATGRRSVKA TNLPKPAVLL GLNAEEDPAL  180
AEIDEGVALL KKQAKEIGEK PDTVVDLAEN NVKLTLPWDD ATTEKMEHHL YELEKQRLIQ  240
EEAQFRSYRL EYEAALASHQ LAIAEQQAAA NAIDGFEIGQ SLDLDLMDDG LLGPPRRYKK  300
RRTGYAVDEY DDRKLDGYAD RRRAKAYRDG DTDPNYSAET GRYGRRAAGR NRRPLNDRNR  360
NFRQRQDHYA QGGRVQGQPG ILSWSRNEDD LLLAIVHEFG VNWTLVSEVL SRSLSLQGIH  420
RPPQQCRHRF RQLITQEGQS LTDEKAYELL TSRLAKQQAR ELLLNSLPVR NESLVRFLEA  480
LAQVGASARN RRLAEEKRCE SIRTQRQEPH TSHKSVVNGI MQQTGGRHLT PLELSAHVMN  540
TYAQQARQIQ APYNPNQPPQ QGGPDGSNGQ IGGPPTVQQM SAPGQGMARP GGGSVAMNIQ  600
QLTNILNANK LPNGSELTDE MRKALEEKKR AYLVRLTQSH KAAMAQRQGL TPSQISSGTA  660
MASMQVNARP QMGTVVAPGM NMYAGNPGPA QGVTGVPAQG AIQQGVAILP GGQQQNQQYM  720
VPRAQQAPPV QGQQQNQ*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP349122