PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_177.g562.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 552aa    MW: 62624.9 Da    PI: 7.2273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_177.g562.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-11102141445
                                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                           W ++E+ ll+++v+ +G g+W  Ia+++g  R++++ck++++
  model.Picochlorum_contig_177.g562.t1 102 WGADEETLLLEGVEHFGLGNWPQIASHVG--RSAEDCKEHYF 141
                                           ****************************8..**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250242.6E-11628549IPR016827Transcriptional adaptor 2
SMARTSM002912.5E-103883IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013511.3973885IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.83E-1540105No hitNo description
PfamPF005692.5E-84081IPR000433Zinc finger, ZZ-type
CDDcd023355.20E-254290No hitNo description
PROSITE patternPS0135704471IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.25E-1094148IPR009057Homeodomain-like
PROSITE profilePS5129318.20997148IPR017884SANT domain
SMARTSM007173.5E-998146IPR001005SANT/Myb domain
PfamPF002492.8E-10100142IPR001005SANT/Myb domain
CDDcd001678.60E-9102143No hitNo description
Gene3DG3DSA:1.10.10.601.1E-8102142IPR009057Homeodomain-like
SuperFamilySSF466892.54E-11460546IPR009057Homeodomain-like
PROSITE profilePS509349.244461551IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MFYINYRNAK RKKDAKQGKA GASGGKKKKG GAVVKRGGIH KYHCDYCQKD LSTSLRIKCN  60
ECDDFDLCLE CFSVGAQVTP HKNTHAYRVV DSLSFPVYTM GWGADEETLL LEGVEHFGLG  120
NWPQIASHVG RSAEDCKEHY FRVYIETDCF PQPQKSEELR SPHAVEDIKN LIEEKRRAGA  180
RKIAAMKSGV KLEDEDVLAP GEQGADAEKD SDSNLQDKTV EVKEHPTATT GTKTPHSNTV  240
GSPADGTPVV ALAESQHSGY HAKRNEFEIE YDHEAENLIA ELDFADDDTE EEQAEKLKLI  300
EIYNKRLDER ERRKAFVLSR GLVKVKRQQL IDRRRTNSEK DLLGKLRVFA RYMPHPQWEA  360
LSDGLTIEGR LRARIQELKE YRSMGMRTFE EVDAYVESAG PGKKEPSINN QPGRSKLQRI  420
LIDNFALETE IQKMDTPHAT RLVHDKNCMI PEGKGVNGVQ VWRAKRGILL DVTSLPDSEP  480
LTQEERRLCA TERYLPAQYL AVKASMMKKQ EEEGFVTKKD ILALPFAVDE ERSLRLLEFF  540
KQSNWVKLNK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E5e-33381531117Transcriptional adapter 2
6cw3_G5e-33381531117Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11028RKKDAKQGKAGASGGKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402112.11e-1634-hydroxyphenylpyruvate dioxygenase
TrEMBLA0A087STK91e-162A0A087STK9_AUXPR; 4-hydroxyphenylpyruvate dioxygenase
STRINGA0A087STK91e-163(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP187466