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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_177.g562.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | MYB_related | ||||||||
Protein Properties | Length: 552aa MW: 62624.9 Da PI: 7.2273 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.6e-11 | 102 | 141 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++v+ +G g+W Ia+++g R++++ck++++ model.Picochlorum_contig_177.g562.t1 102 WGADEETLLLEGVEHFGLGNWPQIASHVG--RSAEDCKEHYF 141 ****************************8..**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 2.6E-116 | 28 | 549 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 2.5E-10 | 38 | 83 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 11.397 | 38 | 85 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.83E-15 | 40 | 105 | No hit | No description |
Pfam | PF00569 | 2.5E-8 | 40 | 81 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 5.20E-25 | 42 | 90 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 44 | 71 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.25E-10 | 94 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 18.209 | 97 | 148 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-9 | 98 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-10 | 100 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.60E-9 | 102 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 102 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.54E-11 | 460 | 546 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 9.244 | 461 | 551 | IPR007526 | SWIRM domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MFYINYRNAK RKKDAKQGKA GASGGKKKKG GAVVKRGGIH KYHCDYCQKD LSTSLRIKCN 60 ECDDFDLCLE CFSVGAQVTP HKNTHAYRVV DSLSFPVYTM GWGADEETLL LEGVEHFGLG 120 NWPQIASHVG RSAEDCKEHY FRVYIETDCF PQPQKSEELR SPHAVEDIKN LIEEKRRAGA 180 RKIAAMKSGV KLEDEDVLAP GEQGADAEKD SDSNLQDKTV EVKEHPTATT GTKTPHSNTV 240 GSPADGTPVV ALAESQHSGY HAKRNEFEIE YDHEAENLIA ELDFADDDTE EEQAEKLKLI 300 EIYNKRLDER ERRKAFVLSR GLVKVKRQQL IDRRRTNSEK DLLGKLRVFA RYMPHPQWEA 360 LSDGLTIEGR LRARIQELKE YRSMGMRTFE EVDAYVESAG PGKKEPSINN QPGRSKLQRI 420 LIDNFALETE IQKMDTPHAT RLVHDKNCMI PEGKGVNGVQ VWRAKRGILL DVTSLPDSEP 480 LTQEERRLCA TERYLPAQYL AVKASMMKKQ EEEGFVTKKD ILALPFAVDE ERSLRLLEFF 540 KQSNWVKLNK K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 5e-33 | 38 | 153 | 1 | 117 | Transcriptional adapter 2 |
6cw3_G | 5e-33 | 38 | 153 | 1 | 117 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 28 | RKKDAKQGKAGASGGKKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011402112.1 | 1e-163 | 4-hydroxyphenylpyruvate dioxygenase | ||||
TrEMBL | A0A087STK9 | 1e-162 | A0A087STK9_AUXPR; 4-hydroxyphenylpyruvate dioxygenase | ||||
STRING | A0A087STK9 | 1e-163 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1874 | 6 | 6 |