PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_17.g23.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | C3H | ||||||||
Protein Properties | Length: 461aa MW: 50307.1 Da PI: 6.1919 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 21 | 41 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++++ G C++G+ C+F+H+ model.Picochlorum_contig_17.g23.t1 21 LCKYYMN-GACSRGEACSFSHD 41 8**9999.*************7 PP | |||||||
2 | zf-CCCH | 23.8 | 7.9e-08 | 49 | 69 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +++r G+C +Gd+C++ H+ model.Picochlorum_contig_17.g23.t1 49 VCTHWLR-GHCAFGDKCRYDHV 69 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.629 | 16 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 17 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-7 | 17 | 41 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 21 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-7 | 21 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-5 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 48 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 49 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.89 | 235 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.343 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.5E-10 | 300 | 364 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.38E-9 | 303 | 367 | No hit | No description |
CDD | cd00162 | 1.54E-6 | 303 | 359 | No hit | No description |
Pfam | PF00097 | 3.1E-7 | 304 | 358 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.563 | 304 | 359 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.2E-6 | 304 | 358 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 326 | 335 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.16 | 388 | 416 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 388 | 417 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 393 | 418 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.011 | 393 | 414 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MATIAGHGRQ EEGTAGKSSI LCKYYMNGAC SRGEACSFSH DLAIAPNTVC THWLRGHCAF 60 GDKCRYDHVR PEWAPARGNG VASQGYDAPL GVPRPDTDRL EDVLPISKLR ISRHRGVDQG 120 VGYESVEEDT VPVVTLPADP FGSDECKTTV TVLDSGVYEG ADDAYGESSG HKLEGMCAAN 180 SFQGGYAGSN ANTTGGCSSD GNPHSSLSTS PHFNAWGLDG DGAWEDMDQG VQAWSGGVSL 240 CYEYYQTGSC SNGHCRLAHG LWCEICENYA LHPSDESEAQ KHVVECKARH DRLLKRIQSA 300 HVECCICLEK VLEKVGGDHK FGLLNCDHPF CLSCIRNWRS NVMGGADVDS ALRTCPVCRI 360 TTHYITPSVT WPQTQEEKEE IIAGYKAKLA SIPCRNFNYG QGTCPFGTSC MYRHQYADGR 420 LEESDPRRVA ADEGEVKFVQ PVRLSDFLEI KQGKVRGRRR * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005852185.1 | 1e-80 | hypothetical protein CHLNCDRAFT_18295 | ||||
STRING | XP_005852185.1 | 5e-80 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1918 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 4e-62 | C3H family protein |