PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_17.g23.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 461aa    MW: 50307.1 Da    PI: 6.1919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_17.g23.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-092141526
                                        --SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                        lC++++  G C++G+ C+F+H+
  model.Picochlorum_contig_17.g23.t1 21 LCKYYMN-GACSRGEACSFSHD 41
                                        8**9999.*************7 PP
2zf-CCCH23.87.9e-084969526
                                        --SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                         C +++r G+C +Gd+C++ H+
  model.Picochlorum_contig_17.g23.t1 49 VCTHWLR-GHCAFGDKCRYDHV 69
                                        6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.6291643IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-71741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-52141IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-72141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9814471IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-54570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-54868IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-54972IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-54969IPR000571Zinc finger, CCCH-type
SMARTSM003560.89235261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.343235262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-10300364IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.38E-9303367No hitNo description
CDDcd001621.54E-6303359No hitNo description
PfamPF000973.1E-7304358IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.563304359IPR001841Zinc finger, RING-type
SMARTSM001841.2E-6304358IPR001841Zinc finger, RING-type
PROSITE patternPS005180326335IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.16388416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723388417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4393418IPR000571Zinc finger, CCCH-type
PfamPF146080.011393414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MATIAGHGRQ EEGTAGKSSI LCKYYMNGAC SRGEACSFSH DLAIAPNTVC THWLRGHCAF  60
GDKCRYDHVR PEWAPARGNG VASQGYDAPL GVPRPDTDRL EDVLPISKLR ISRHRGVDQG  120
VGYESVEEDT VPVVTLPADP FGSDECKTTV TVLDSGVYEG ADDAYGESSG HKLEGMCAAN  180
SFQGGYAGSN ANTTGGCSSD GNPHSSLSTS PHFNAWGLDG DGAWEDMDQG VQAWSGGVSL  240
CYEYYQTGSC SNGHCRLAHG LWCEICENYA LHPSDESEAQ KHVVECKARH DRLLKRIQSA  300
HVECCICLEK VLEKVGGDHK FGLLNCDHPF CLSCIRNWRS NVMGGADVDS ALRTCPVCRI  360
TTHYITPSVT WPQTQEEKEE IIAGYKAKLA SIPCRNFNYG QGTCPFGTSC MYRHQYADGR  420
LEESDPRRVA ADEGEVKFVQ PVRLSDFLEI KQGKVRGRRR *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005852185.11e-80hypothetical protein CHLNCDRAFT_18295
STRINGXP_005852185.15e-80(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-62C3H family protein