PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g127.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 279aa    MW: 30803.3 Da    PI: 9.8751
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g127.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.35.8e-10174203331
                                 GATA   3 nCgttk.TplWRrgpdgnktLCnaCGlyyr 31 
                                          +C   + +p+WRrgp   + LCnaCG ++ 
  model.Picochlorum_contig_16.g127.t1 174 HCLNPNeSPQWRRGPPEAPILCNACGTRWL 203
                                          5544445********77777********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-4166224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-6178213No hitNo description
PfamPF003201.6E-7179202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-7179207IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.51E-7180202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRTIVSGVV HEIRSAADRG VTLTCLQPTF GTEDEPGVSV PKNGGDERTS GADMRRIHKN  60
DGHSTSSRSR SASPGKRKSI AQDGYDDGFP SYEDGLSPED GLSVLLRACE ILGNSSNDQN  120
TRQENTVHSG AHDADTSPRK QVKSPAQSPQ KASRNASPTR SRHEKPHGPC TNKHCLNPNE  180
SPQWRRGPPE APILCNACGT RWLRSKQLIP IMVRQLLHSC IYVHRGDLVF LYFTNAASAW  240
YSIRQIWGKE SKESSCLSCE KGRTSPRWNR NTKTRTTR*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.16e-09GATA transcription factor 26