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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_15.g4.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | SBP | ||||||||
Protein Properties | Length: 977aa MW: 108158 Da PI: 6.8924 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 92.1 | 5.9e-29 | 40 | 115 | 2 | 76 |
-SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq++gC+++l + k+y+ r++vC h ka +v g+++rfCqqC++fh+lsefD +k+sC rL+khn rr++ model.Picochlorum_contig_15.g4.t1 40 CQADGCHVNLVGLkKKYYTRYRVCPDHQKARCSIVGGEKKRFCQQCGKFHALSEFDGNKKSCIARLEKHNVRRKRL 115 **********998468*********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-23 | 37 | 101 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.889 | 37 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.26E-24 | 38 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-25 | 40 | 114 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 5.4E-5 | 619 | 731 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-7 | 623 | 731 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.19E-5 | 624 | 732 | No hit | No description |
PROSITE profile | PS50297 | 9.357 | 625 | 735 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 977 aa Download sequence Send to blast |
MGDSWKQEDW VLHRFSTVAE PREGGGKDSS STVDQVNVEC QADGCHVNLV GLKKKYYTRY 60 RVCPDHQKAR CSIVGGEKKR FCQQCGKFHA LSEFDGNKKS CIARLEKHNV RRKRLREIQH 120 MLKSRGYIDR DALRQKYNIS DKKLAAMEAK AKAKLGMMRK GGNSLDSVLH SSKESDVSTS 180 TDEKDSQSRK SDSVKGYVPT TDQSSCAEIS SPESMLPVNA DLDLLQDSYL DPVVSSVEQQ 240 SDMHADILYL SDERNSWDLD ELCGPTRRES QPNSTFNNDI MSVGAGGKVL PGCADFCQEI 300 LRSVDNPLSH PEWDQELFSV ACKLDKVTPA DLTPGVASGL EGLCDAHAVE GYMRPGCVYL 360 QADAIVEKHK YSTCMDVREK AEKFLRSTAR ADGAPITKNA ILQIDEHLVY TDGNNIRQIF 420 SLRNAGNLLP ALTSVSSLAI VAQREPVEII VESERVRSSD NVFVRSRGEH LETQLMSIET 480 HDKSQSLFIS VFGCVKPGVL QVELNRGPYT TAAQLVVLCT NAEEADEVKM LGVGRNACLR 540 TILYRIGMIM EAKDKLAGGM SHEDVAREYK RAPKSPSESA RALIPLLIQR KMHHLLESAL 600 EAYLCSNRDK QVLMSSIEES CMESTGMTLL QHAVKSQSVE VLQCILSWGQ RYGLSLECCR 660 EGRGKTTALH LAVMVKDKGH AAELLTQYCV DAIDGWEGAK SIDGTSPIAL ATLVGNAEEI 720 EGRISVGAEK NELLSAQEKD TLCKKTWYRV SGSKTTISGQ EQDSEGKEMG VFLEYSSQYL 780 EEQYKVWFNR RRVTIDLSVL AMTMFSQGLA LYTGEYSTSM LAWIAAIILL LYSTAVVGSS 840 FWSQEMYTNH REWLCVGFTL LHTMLHVLTY GSSPSPSSAL IQGSSLLQVI MLTFGLRPRF 900 KALVICLTAM LPMTALLNSS MCSAAFGDIS TATCLSNLLV YQVLVCLIVP SCISYKSEVS 960 MRQSFLDSRL KSKKLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 8e-17 | 40 | 114 | 6 | 79 | squamosa promoter binding protein-like 7 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 6e-20 | squamosa promoter binding protein-like 5 |