PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_146.g610.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 313aa    MW: 34062.8 Da    PI: 9.2597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_146.g610.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-125498347
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                          +W + E++ ++++ + +G+g+Wk I+r+   +Rt+ q+ s+ qk+
  model.Picochlorum_contig_146.g610.t1 54 SWDESEHLAFLKGLQVFGKGQWKQISRYYVPTRTPTQVASHAQKH 98
                                          7***************************999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.79746103IPR017930Myb domain
TIGRFAMsTIGR015574.2E-1450101IPR006447Myb domain, plants
SuperFamilySSF466892.11E-1450103IPR009057Homeodomain-like
SMARTSM007175.6E-951101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-95198IPR009057Homeodomain-like
CDDcd001671.21E-85499No hitNo description
PfamPF002493.5E-95498IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPKHSICTPE CMECGKRAQM EENKKSQEKT TRVLASVLAS GSIMRVPNIK KGVSWDESEH  60
LAFLKGLQVF GKGQWKQISR YYVPTRTPTQ VASHAQKHFL RLSGNTKRRS KFTVVEQNAI  120
ASGISLFNGA SGSGECQGEG ERCGGSGSVS DTKKDVSEYM HGDGGLSKRV KIEDSPQQYQ  180
VLRPRVAIPP IDSNGMALGI PLPEIPELKS YDERKAIPML KVLPGRIKAS CTVFKPSSPS  240
PSQKQTKSSE TCEQVRKTGR YHRPTRMKRD AIVCEHDVEE SECKDDATGG GRSALDALAG  300
VAAALAEDET LL*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.15e-20MYB family protein