PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_142.g612.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family G2-like
Protein Properties Length: 389aa    MW: 42716.5 Da    PI: 10.1527
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_142.g612.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.93.4e-26318371255
                               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                            rl+Wt++LH++F+eav+  GG e+A Pk +++ mkv+gLt+e+v SHLQkYRl
  model.Picochlorum_contig_142.g612.t1 318 SRLVWTEKLHRKFLEAVDACGGVEHALPKPVMKQMKVEGLTRENVSSHLQKYRL 371
                                           79***************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.98314374IPR017930Myb domain
SuperFamilySSF466892.15E-16314375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-25315375IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-21318372IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MQSAPFGQGK QKPPFGTGNS ECPENVINNF HDIESFLENV LVKNPVSINA ELVPTVLSRG  60
LGLSADSSSI GGQGSNDRRQ GSGKPWSSVS NGGQGNTMTQ NGNVTGAEGR LPKQLRASGG  120
IGPLGETPLV GSGQKRGRDE INNNTTSRNN VNITDDPATG TGEKGKKLHE GTKAFARKEK  180
EHRHDARKKH GHGHTGKQQK QMRENQKQMQ WNQEHFQEQL QRQFQQQQQM QQQLQQMQQQ  240
NQQAAMAAAY GSSQPNSFPP GGPIGFPGVP PGYMFPGQQP PFSSIPYPFP FPPGDKGARF  300
YGGTEADVHE EDQTTKRSRL VWTEKLHRKF LEAVDACGGV EHALPKPVMK QMKVEGLTRE  360
NVSSHLQKYR LRLKKSKDAV DEQHSESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16317374157Transcription factor LUX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.12e-20G2-like family protein