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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_142.g612.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | G2-like | ||||||||
Protein Properties | Length: 389aa MW: 42716.5 Da PI: 10.1527 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.9 | 3.4e-26 | 318 | 371 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+Wt++LH++F+eav+ GG e+A Pk +++ mkv+gLt+e+v SHLQkYRl model.Picochlorum_contig_142.g612.t1 318 SRLVWTEKLHRKFLEAVDACGGVEHALPKPVMKQMKVEGLTRENVSSHLQKYRL 371 79***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.98 | 314 | 374 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 314 | 375 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 315 | 375 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-21 | 318 | 372 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MQSAPFGQGK QKPPFGTGNS ECPENVINNF HDIESFLENV LVKNPVSINA ELVPTVLSRG 60 LGLSADSSSI GGQGSNDRRQ GSGKPWSSVS NGGQGNTMTQ NGNVTGAEGR LPKQLRASGG 120 IGPLGETPLV GSGQKRGRDE INNNTTSRNN VNITDDPATG TGEKGKKLHE GTKAFARKEK 180 EHRHDARKKH GHGHTGKQQK QMRENQKQMQ WNQEHFQEQL QRQFQQQQQM QQQLQQMQQQ 240 NQQAAMAAAY GSSQPNSFPP GGPIGFPGVP PGYMFPGQQP PFSSIPYPFP FPPGDKGARF 300 YGGTEADVHE EDQTTKRSRL VWTEKLHRKF LEAVDACGGV EHALPKPVMK QMKVEGLTRE 360 NVSSHLQKYR LRLKKSKDAV DEQHSESK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-16 | 317 | 374 | 1 | 57 | Transcription factor LUX |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 2e-20 | G2-like family protein |