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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_111.g399.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | WRKY | ||||||||
Protein Properties | Length: 745aa MW: 80972.5 Da PI: 6.7703 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79 | 5.2e-25 | 210 | 268 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEE.S--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYe.geHnhe 59 dDgynWrKYG K+vkgs++prsYY+C+++gC++kk ver+ + + ++ + geHnh+ model.Picochlorum_contig_111.g399.t1 210 DDGYNWRKYGEKNVKGSKYPRSYYKCSTPGCTMKKVVERDPVSGIISNTLLKgGEHNHP 268 8******************************************999999887369***7 PP | |||||||
2 | WRKY | 98.5 | 4.3e-31 | 535 | 592 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++ v+++tYeg+H+h+ model.Picochlorum_contig_111.g399.t1 535 EDGYKWRKYGQKVVKGNPHPRSYYKCTSTGCRVRKQVERCSDNVGVLITTYEGKHTHD 592 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.297 | 204 | 270 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.7E-22 | 206 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-20 | 206 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-24 | 209 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-19 | 210 | 268 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-32 | 521 | 594 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-28 | 527 | 594 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.765 | 529 | 594 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-37 | 534 | 593 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 535 | 592 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MVEIGCITLE PDFAFLHTHS LIKNTLMEIK QKEEGEEVQD VGHALVDEGT RHAVMGTGGA 60 DAPMKEGLKE GDGIKNDSVS KGDEMLAQIR SGVKPPAESP VLLPIMRNAL SEFSPTGTSL 120 LSKSGGGDAY AQTYFTEAQA IIAAQIAARA AADVGLCYPW NFTQGQMMPP QAGVISEADR 180 RRSSSVAESD TADAITPGDG GLQVSMAAND DGYNWRKYGE KNVKGSKYPR SYYKCSTPGC 240 TMKKVVERDP VSGIISNTLL KGGEHNHPRP NAARVDVSAF VQSATQAPRY THDDTPSKPT 300 QKRKRVSIQS SGDGSERLDA TRVMEPEDSK RHGEQSQDHT DPTTSITDKV HSKEDMKESA 360 VMALQLLGTG FSPDIPSLGP GMSGTPTNLL PLPATLRSSP LIAKTKNGTK SHTLYTVYSS 420 PNHQAPSDLL DHGEVNSEDE WEMAEEDFGT EDNETVNAAI AAAAAYICRE LKNPSIDDTK 480 MKREDTMMIA AEADEKKAMP KKSASKAPRE KKTERKKHET SKTVIRTETD SDQIEDGYKW 540 RKYGQKVVKG NPHPRSYYKC TSTGCRVRKQ VERCSDNVGV LITTYEGKHT HDPPLMRNNN 600 TQSRVKMPGD QGYIADKNQV FSPALAPACF PMMSPASLMA SDSPNTFGHH FLSGSPSIHQ 660 DTPDHVPHSL GISSPAEQLQ LYSIQQAAAQ QKINAHLVQQ AKAWQEALAR SPAALQTFQM 720 LAQQQQQSPR GGSLDVTQSP NKNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-26 | 198 | 594 | 4 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 198 | 594 | 4 | 77 | Probable WRKY transcription factor 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP469 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-28 | WRKY DNA-binding protein 33 |