PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_107.g552.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 585aa    MW: 64211.9 Da    PI: 6.9645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_107.g552.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-13135178348
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                           +W+ eE+e++++a  ++G + Wk+ a+++g +R +  + s+ qk+l
  model.Picochlorum_contig_107.g552.t1 135 AWSDEEEERFKEALSMFGRD-WKKCAEHIG-TRDARAVASHTQKFL 178
                                           7*****************77.*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.363128182IPR017930Myb domain
SuperFamilySSF466895.68E-9130179IPR009057Homeodomain-like
SMARTSM007178.9E-9132180IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.4E-8134180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-6134173IPR009057Homeodomain-like
PfamPF002492.0E-9135177IPR001005SANT/Myb domain
CDDcd001671.24E-6135173No hitNo description
SuperFamilySSF1027125.75E-17328457No hitNo description
PfamPF013981.2E-8329435IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.109.3E-16332468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDAATDAEIA RILAEEHHGG IYEYGYMNED DSGDDDPDYG TTRKKRAQKR QKARVIEAEL  60
MPPGMAKTQE AGRDGALQSS GAGNGNVGAA RYEGDADGVK KQAKQQQLQQ GDLGYSATGR  120
RKRKDTGATR TASRAWSDEE EERFKEALSM FGRDWKKCAE HIGTRDARAV ASHTQKFLIK  180
ALLRGEELPE AMARSGRGYT LSGKPLDPNS SAARAYGLRP KEFLKIVESG FLEVGVHVTT  240
FEVDGGDGST LASPKQQKKK VSKSGDDEVP ARSTSPPPQP TEYALNRPRR TLGGQKSQLG  300
DTTESLDLTD LQEFMGPIGA EGGRCQPFAV TISEDAVLVM DFHAHLSSCE VIGLLGGTFD  360
TNTKQLVVKG AYPCRRTAGS DSTTSVELDP ASQVIVKDEM ATDGLIPVGW YHSHPIFEAR  420
PSAKDNENQR NYQAFAADKS TGLEPWVGMI IGPYDEQLPT PASHVQAWVV RSQNKNVIPY  480
NIRYQKDPPK ARITPALVKR LESALENLVG DPGRLNMQQL WRPFTFYRQG LPEGPAMKRS  540
EKLRAALNSH LPIQDQPDAV SQFHQTIDAM FLKYWGTRLF DSNA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849821.11e-149expressed protein
STRINGXP_005849821.11e-149(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10113.13e-10MYB_related family protein