PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 137aa MW: 15300.3 Da PI: 8.3268

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold31422-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34	7.1e-11	22	62	13	56
AP2 13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 g +AeIrdp+ r r +lg++ t+eeAa +++a+ kl+g+ maker-scaffold31422-augustus-gene-0.2-mRNA-1 22 GCHAAEIRDPT----RrVRLWLGTYETKEEAAMVYDNAAIKLRGP 62 5568***84....34************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.04	10	69	IPR001471	AP2/ERF domain
CDD	cd00018	3.98E-19	17	68	No hit	No description
SMART	SM00380	1.3E-17	17	75	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-18	17	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-14	18	69	IPR016177	DNA-binding domain
Pfam	PF00847	5.4E-5	22	61	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDQSILCPIK AQSCTDIRDR PGCHAAEIRD PTRRVRLWLG TYETKEEAAM VYDNAAIKLR 60 GPDALTDFVT PPPPLPPIQK SEINIASVSS YDSGDEFHNL SSPTSVLHFV QIDGQFARCP 120 KQRKNSKSYI SQRRAGI

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023908546.1	3e-43	ethylene-responsive transcription factor CRF4
Swissprot	Q9SUE3	2e-26	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A2N9EMZ3	5e-40	A0A2N9EMZ3_FAGSY; Uncharacterized protein
STRING	Solyc06g051840.1.1	3e-37	(Solanum lycopersicum)
STRING	PGSC0003DMT400006041	3e-37	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-26	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]