PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold24892-snap-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 24417.2 Da PI: 6.077 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 28 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++l+++++++ G++ W+ Ia++++ +Rt++q+k++w+++l maker-scaffold24892-snap-gene-0.2-mRNA-1 28 RGNFTNEEEDLIIKLHEEAGNK-WSMIAKHLP-RRTDNQIKNHWHTHL 73 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.368 | 1 | 22 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-11 | 8 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.3E-24 | 8 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.487 | 23 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 28 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.60E-12 | 30 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 36 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMFWTGLSRC GKSCRLRWLN YLHPDVKRGN FTNEEEDLII KLHEEAGNKW SMIAKHLPRR 60 TDNQIKNHWH THLKKHVKQN PKKSEVKEQF NETSPCKAKK NRESERESLH ASASSHQTLE 120 SSPLSTELSS SEHFSLRYDH PPVTGINWAE EDCLTSFETF EDTFGDFWTE PFVADNTNIP 180 DEFPISPYIL YHDDIDLFDQ VMQELPKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-18 | 8 | 77 | 39 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873799.1 | 1e-129 | transcription factor MYB15-like | ||||
TrEMBL | A0A2N9EJE9 | 9e-94 | A0A2N9EJE9_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_023393m | 1e-61 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40330.1 | 5e-37 | myb domain protein 23 |