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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold23714-snap-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33257.7 Da PI: 8.4776 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89 | 8.4e-28 | 69 | 204 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewy 59 lp+G++F+P+d el+ e+L++k+ + + +e+i++++ i++++P+dLp maker-scaffold23714-snap-gene-0.3-mRNA-1 69 LPVGVKFEPSDAELL-EHLAAKCGVGNsnphlfI--DEFIPTLEgdkgICYSHPEDLP--------VSI 126 799************.999999876665666432..334554423344*********9........247 PP NAM 60 fFskrdkkyatgkrknra.......tk.sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgek 118 fF+++ ++ya+g+rk+r+ t+ +W++tgk+k++++ +g ++g+kk++v+y +++ +k+ k maker-scaffold23714-snap-gene-0.3-mRNA-1 127 FFHRTTNAYASGQRKRRKiqsehslTEgPVRWHKTGKTKPLME-NGLQKGCKKIMVLYksSKKGSKPDK 194 *****************85666665333567************.999***********4434666778* PP NAM 119 tdWvmheyrl 128 ++Wvmh+y+l maker-scaffold23714-snap-gene-0.3-mRNA-1 195 SNWVMHQYHL 204 ********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-33 | 54 | 223 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.744 | 69 | 223 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-13 | 70 | 204 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSYYWNSKLI IANHSCRAWL INSRALARKV RNVTCSAAHQ IKDCGANREC PNCHCRIDNS 60 DVSPEWPGLP VGVKFEPSDA ELLEHLAAKC GVGNSNPHLF IDEFIPTLEG DKGICYSHPE 120 DLPVSIFFHR TTNAYASGQR KRRKIQSEHS LTEGPVRWHK TGKTKPLMEN GLQKGCKKIM 180 VLYKSSKKGS KPDKSNWVMH QYHLGTEENE KEGEFVVSKI FYQQQKQTEN NDGNLVVEDS 240 DIMTPRTSPR TPKANPPNPP RPGISVQSDD VVENNDLSSL QSIYTRGELL VVFKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023915990.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 3e-79 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2N9I3N0 | 1e-152 | A0A2N9I3N0_FAGSY; Uncharacterized protein | ||||
STRING | EMJ16704 | 1e-137 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7572 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 9e-86 | NAC domain containing protein 44 |