PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold23116-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 294aa    MW: 32881.7 Da    PI: 7.1008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold23116-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.32.3e-102227178358
                                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppsl 142
                                                   l+++++ ++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p l
  maker-scaffold23116-augustus-gene-0.5-mRNA-1   2 LKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFL 66 
                                                   578999*********************************************************** PP

                                          GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
                                                   RiTgvgs    s e+++etg+ L+++ ++l++pfef++ v ++ledl++++++ + gEalaVn+v
  maker-scaffold23116-augustus-gene-0.5-mRNA-1  67 RITGVGS----SIESVRETGKCLTELPHSLHIPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNSV 126
                                                   *******....9**************************.7************************* PP

                                          GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                                                    +lhr++  s sl +    +L ++++  P++v+ veqea+hn++ Fl rfleal+yysa+fdsl+
  maker-scaffold23116-augustus-gene-0.5-mRNA-1 127 NRLHRVP--SNSLGN----LLAMIRDQAPNIVTQVEQEASHNGPYFLGRFLEALHYYSAIFDSLD 185
                                                   ******9..666666....********************************************** PP

                                          GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                                   a + +es +r+kvE+ ++++ei+n+va eg er+erhe+lekWr+ +e  GFk vpls +a++q 
  maker-scaffold23116-augustus-gene-0.5-mRNA-1 186 AMFTPESAQRAKVEQYIFAPEIRNIVAFEGPERTERHERLEKWRKIMEGKGFKGVPLSANAVTQS 250
                                                   ***************************************************************** PP

                                          GRAS 338 klllrkvksdgyrveeesgsl 358
                                                   k ll  ++ dgyr+ e++g++
  maker-scaffold23116-augustus-gene-0.5-mRNA-1 251 KILLGLYSCDGYRLTEDKGCV 271
                                                   ******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.6141267IPR005202Transcription factor GRAS
PfamPF035148.0E-1002271IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
VLKIYQIVYQ ACPYIKFAHF TANQAIFEAF EAEERVHVID LDILQGYQWP AFMQALAARP  60
GGAPFLRITG VGSSIESVRE TGKCLTELPH SLHIPFEFHP VGEQLEDLKP HMFNRRVGEA  120
LAVNSVNRLH RVPSNSLGNL LAMIRDQAPN IVTQVEQEAS HNGPYFLGRF LEALHYYSAI  180
FDSLDAMFTP ESAQRAKVEQ YIFAPEIRNI VAFEGPERTE RHERLEKWRK IMEGKGFKGV  240
PLSANAVTQS KILLGLYSCD GYRLTEDKGC VGKIATHLCG LGGLEKNPKA ASQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-82127194362Protein SCARECROW
5b3h_D3e-82127194362Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447014.10.0DELLA protein RGL1
RefseqXP_006470106.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A067F9100.0A0A067F910_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2P5CJP50.0A0A2P5CJP5_PARAD; GRAS transcription factor
TrEMBLV4W2V40.0V4W2V4_9ROSI; Uncharacterized protein
STRINGXP_006470106.10.0(Citrus sinensis)
STRINGXP_006447014.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-80GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]