![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold22384-snap-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 122aa MW: 13573 Da PI: 4.138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.4 | 4.6e-09 | 62 | 116 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLp 48 lp+G++F+Ptd+e++ e+L++k+ +++ ++ e +++ +i++++P++Lp maker-scaffold22384-snap-gene-0.5-mRNA-1 62 LPAGVKFDPTDHEIL-EHLEAKILSDTrklhplID--EfipTLEGEnGICYTHPEKLP 116 799***********9.99****9999956644322..22222333336*********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-9 | 56 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.548 | 62 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MTWCNDSDDD RALQIITATS KENTNVLDPS KTDDIRNTIT CPSCGQDIEF QDQAGIHDLP 60 GLPAGVKFDP TDHEILEHLE AKILSDTRKL HPLIDEFIPT LEGENGICYT HPEKLPGDSY 120 PN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018854823.1 | 3e-70 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-44 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2N9G7P6 | 3e-70 | A0A2N9G7P6_FAGSY; Uncharacterized protein | ||||
STRING | VIT_10s0003g00350.t01 | 2e-60 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17526 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 6e-47 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|