PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold21216-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 192aa MW: 21749.4 Da PI: 7.569

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold21216-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.6e-11	61	101	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +k++rr+++NReAAr+sR+RKka++++Le+ k ++Le+e maker-scaffold21216-augustus-gene-0.2-mRNA-1 61 DKVQRRLAQNREAARKSRLRKKAYVQQLETsrlKLAQLEQE 101 89***************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-8	54	107	No hit	No description
SMART	SM00338	4.7E-6	58	118	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	60	104	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-9	61	100	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-8	62	105	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.6E-16	146	192	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGIYEPFQQV SMWGDTFKGD SIPNASTILQ VDARLENKTE FISHDSMGPS GNEQEANKPG 60 DKVQRRLAQN REAARKSRLR KKAYVQQLET SRLKLAQLEQ ELERARKQDS GTLPYSGVYI 120 CPPDTGHVGF SANVNSGIAA FEMEYAHCVE EQNRQIYAAK ADVFYLISGV WRTSAERFFH 180 WIGGFRPSEL LN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023911614.1	1e-119	transcription factor TGA7
Refseq	XP_023911615.1	1e-119	transcription factor TGA7
Swissprot	Q93ZE2	7e-64	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2N9G799	1e-106	A0A2N9G799_FAGSY; Uncharacterized protein
STRING	XP_006472677.1	2e-88	(Citrus sinensis)
STRING	XP_006434079.1	2e-88	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19719	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	3e-66	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]