PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold19126-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 381aa    MW: 41869 Da    PI: 7.0479
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold19126-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32214269156
                                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                               k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  maker-scaffold19126-snap-gene-0.3-mRNA-1 214 KQRRNWSPELHKRFVNALHQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 269
                                               79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.155211271IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-29211272IPR009057Homeodomain-like
SuperFamilySSF466897.57E-18212272IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-26214269IPR006447Myb domain, plants
PfamPF002499.9E-9216267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQHAGLGFRE YVEALEEERR KIQVFQRELP LCLELVNQAI DACRQQMSGT TTENNLHGQS  60
ESSEQTTSNE VVPVFEEFIP MKRSSDLSDD DGEEEEHSHE DKREKANNDN NNNDKKKSDW  120
LRSVQLWHPS SDPPLKEDVP RKTTVMEVKR NSGAFQPFHR EKSVGNGKSN VSVVGKLPSQ  180
APVAVATTSS SAETASGGGG SEKRDEKDGQ SQRKQRRNWS PELHKRFVNA LHQLGGSHAA  240
TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPTTIHN NGNPQAPQFV VVGGIWVQPP  300
EYSAAVTATT TSGEVGAGNG IYAPMAAAPA VQPASSSQIQ RLQKEPSSQS DERFSHSGNR  360
GCSNSPATSS STHTTTTSPV F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905032.10.0transcription factor HHO3-like
SwissprotQ9FPE81e-101HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A2N9HRG40.0A0A2N9HRG4_FAGSY; Uncharacterized protein
STRINGXP_008243179.11e-147(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.15e-83G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]