PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18790-augustus-gene-0.4-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 572aa    MW: 65906.6 Da    PI: 9.3742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18790-augustus-gene-0.4-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09529549425
                                                   ---SGGGGTS--TTTTT-SS-S CS
                                       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                                    lCr++a+ G C++Gd+CkF H
  maker-scaffold18790-augustus-gene-0.4-mRNA-2 529 QLCRYYAQ-GRCHFGDSCKFLH 549
                                                   69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.302.6E-1194142IPR003034SAP domain
SuperFamilySSF689062.2E-895142No hitNo description
PfamPF020377.4E-10107141IPR003034SAP domain
SMARTSM005131.3E-4107141IPR003034SAP domain
PROSITE profilePS5080010.026107141IPR003034SAP domain
Gene3DG3DSA:4.10.1000.101.0E-7522551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23526552IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4526551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7526550IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6529549IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAASEHTKEY PFEEEDEEYS ESEGSHSDHD SDDSDKDPSY TILEKTSAKF SDLSIKNNKK  60
SKARIVEDND MDYEGDSNEV EVVVPELDEK DKKSYEEVQK IIEAGQLEKL KVDQCKVYLR  120
KNGLRLTGNK DTLIQRIKEH LEILNGGGEN KYPASSFVLN CKGDACTGDV VMFEQNVYEM  180
FNIASRSASG PPCGKRIVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR  240
NLYRLKTLRQ RWEDEGNRQK VLMEKHSRGF VARSDRESRI QEKENKKMRY SLLLTYWNTV  300
IFYWISKKET NRNQSQFNSI STVKCAIQPP QSDLLVNSRK PTFRPSQSGQ NYNSEKSGFG  360
PPKLDPSVNS GKPANSQQQL VAFLDPGKLD MRPQQLGSFT HLGRPTEQTR VAATQPRIAA  420
TQPQQQTNTT KSDYHHQQPS QSFVESMHAS NMERMYSGHQ AYIQRNNYQA HSDKYPNTYG  480
TRGLSDRTSN RQPFTSMNQF PPRSPPPLTS VNHFPSMSLP RRQGHMQQQL CRYYAQGRCH  540
FGDSCKFLHE RRREYGQRRE DRWPCDQRNL RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-31AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901258.10.0zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2N9EQG40.0A0A2N9EQG4_FAGSY; Uncharacterized protein
STRINGXP_009336688.11e-175(Pyrus x bretschneideri)
STRINGXP_009336698.11e-175(Pyrus x bretschneideri)
STRINGXP_009336708.11e-175(Pyrus x bretschneideri)