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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold18635-augustus-gene-0.2-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
LBD |
Protein Properties |
Length: 169aa MW: 19208.6 Da PI: 6.3381 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold18635-augustus-gene-0.2-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 118.9 | 3e-37 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65
+CaaCk lrr+C++dCvlapyfp ++p+ f +vhk+FGasn++k+l++l+ + r a++++ +eA
maker-scaffold18635-augustus-gene-0.2-mRNA-1 6 RCAACKSLRRRCPTDCVLAPYFPPTNPQGFSCVHKIFGASNITKMLEQLSVHLRAVAADCMSFEA 70
6**************************************************************** PP
DUF260 66 earardPvyGavgvilklqqqleqlkaelallkee 100
r++dPvyG+v++i++lq+q+ +++ el+++k e
maker-scaffold18635-augustus-gene-0.2-mRNA-1 71 SSRVEDPVYGSVRIISQLQEQITEAQRELVKTKGE 105
*****************************999876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MSNSSRCAAC KSLRRRCPTD CVLAPYFPPT NPQGFSCVHK IFGASNITKM LEQLSVHLRA 60 VAADCMSFEA SSRVEDPVYG SVRIISQLQE QITEAQRELV KTKGEIAFHN AQQQQQQQMQ 120 QLQMIHAIAQ EGEDQHSWLS SSQQDPFPNV NQQLIEDYKY SNTFFGFEF
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