PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold17830-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 323aa    MW: 36868.2 Da    PI: 6.6286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold17830-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-131461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+WT+eEd +l+  v++ G  +W + ++  g+ R++k+c++rw +yl
  maker-scaffold17830-augustus-gene-0.4-mRNA-1 14 KGAWTPEEDCKLKSFVQRSGHSNWCKLPKLAGLSRCGKSCRLRWVNYL 61
                                                  79********************************************97 PP
2Myb_DNA-binding53.65e-1767112148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                   rg++T+eE+el+++++++ G++ W+ Iar ++ gR ++++k++w+++l
  maker-scaffold17830-augustus-gene-0.4-mRNA-1  67 RGNFTKEEEELIIKLHEEAGNK-WSMIARNLP-GRADNEIKNHWHTHL 112
                                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.198961IPR017930Myb domain
SuperFamilySSF466896.97E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-221568IPR009057Homeodomain-like
CDDcd001674.77E-91661No hitNo description
PROSITE profilePS5129425.19662116IPR017930Myb domain
SMARTSM007179.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1467112IPR001005SANT/Myb domain
CDDcd001671.78E-1069112No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVRGPFYDKN GLKKGAWTPE EDCKLKSFVQ RSGHSNWCKL PKLAGLSRCG KSCRLRWVNY  60
LQPGVKRGNF TKEEEELIIK LHEEAGNKWS MIARNLPGRA DNEIKNHWHT HLKKYVKQNP  120
KTSEVKEKSE TSQLCKAKEN RESESESLHG SDSSHQSLES SPLSKELSST KLFSLSRDHS  180
PVNGKNCTED SLASLETSEN SFGNMHAKKY TKQRFETESL HASAHFHHIL EISPLSTEVS  240
SAKFFSLGST DHSPKPGINW IEEDSLASFE TFEEAFGNFW TEPFVADYMY IPDEFPMSQY  300
ISYYDDGIGI DLFDQVMQEL PKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891299.11e-161transcription factor WER-like
RefseqXP_023891300.11e-161transcription factor WER-like
TrEMBLA0A2N9EJE99e-96A0A2N9EJE9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-46myb domain protein 15