 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold16464-augustus-gene-0.2-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
NAC |
| Protein Properties |
Length: 347aa MW: 38251.9 Da PI: 9.1643 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold16464-augustus-gene-0.2-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173.3 | 7.5e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65
lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd
maker-scaffold16464-augustus-gene-0.2-mRNA-1 15 LPPGFRFHPTDEELVVHYLKRKLASAPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRD 78
79****************************.89***************8888999********** PP
NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ky++g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
maker-scaffold16464-augustus-gene-0.2-mRNA-1 79 RKYPNGARPNRAATSGYWKATGTDKPILTSnGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
***************************99867788***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKRKLASA PLPVTIIAEI DLYKFDPWEL 60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG TQKVGVKKAL 120
VFYGGKPPKG IKTNWIMHEY RLVDNTSTSK PTTTASDATN KKGSLRLDDW VLCRIYKKNN 180
TQRPIMDQDK EDSMEAMIPT MPTMSMASQH NGKVPLPSKT ANYTALLDND FENYFDGILS 240
AEGMQNGSIS HNLATSSSKS STLAVKRTLP SQFWNEAGSL GSSSSGGKRF HGDLNSGSAG 300
LDENNSFVSL LNQLPQGASF HSNSLLGSLC DGVLRQQFQL PSINWNS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-75 | 15 | 181 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-75 | 15 | 181 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-75 | 15 | 181 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-75 | 15 | 181 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-75 | 15 | 181 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 1e-75 | 15 | 181 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
