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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | maker-scaffold16189-augustus-gene-0.2-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | WRKY | ||||||||
| Protein Properties | Length: 344aa MW: 38637.9 Da PI: 5.1252 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 93.2 | 2e-29 | 122 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK++ g++fpr+YYrCt++ gC ++k+v+r++edp+++e+tY+g+H+++
maker-scaffold16189-augustus-gene-0.2-mRNA-1 122 LDDGYSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRCDEDPTIFEVTYRGRHTCS 183
59***************************98999**************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.0E-29 | 114 | 184 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 23.296 | 117 | 180 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 1.96E-26 | 121 | 184 | IPR003657 | WRKY domain |
| SMART | SM00774 | 1.4E-42 | 122 | 184 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 4.1E-27 | 123 | 182 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 344 aa Download sequence Send to blast |
MAMEWEQKTL ISELNQGKEL AKQLMNHLNP SSSHETRECL IEKILSSYEK ALSMINWGAC 60 VGEPKSTINN LESPSSFAIT SPRSEGYEQD SKHKDVYKKR KTLPRWTEQV KVCSGTGLEG 120 PLDDGYSWRK YGQKDILGAN FPRGYYRCTH RHSQGCLATK QVQRCDEDPT IFEVTYRGRH 180 TCSQASHLNV ASASVKENKR KFQPQQQSQE IVFNYGGGLK SEDLEIREDD IFPSFSFPST 240 PIGSENADNN IFSESIMLEN NFMGSFSPTF ISPATSESNL FSLSPCHMNS YGLGHNMQTS 300 ESDLTDIISA PTSVTNSPIG NLDFSLDKVD IDPNFPFDNP EFFS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ir8_A | 4e-22 | 122 | 182 | 8 | 68 | OsWRKY45 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023899819.1 | 0.0 | probable WRKY transcription factor 53 | ||||
| Swissprot | Q9SUP6 | 5e-54 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
| TrEMBL | A0A2N9J396 | 0.0 | A0A2N9J396_FAGSY; Uncharacterized protein | ||||
| STRING | POPTR_0014s09190.1 | 1e-167 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF493 | 34 | 157 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G23810.1 | 2e-56 | WRKY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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