PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15973-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 269aa    MW: 31144.6 Da    PI: 4.7535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15973-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.3e-131461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  maker-scaffold15973-augustus-gene-0.5-mRNA-1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                                                  89******************************99************97 PP
2Myb_DNA-binding54.62.5e-1767110146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   rg +T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
  maker-scaffold15973-augustus-gene-0.5-mRNA-1  67 RGGFTETEENQIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                                                   788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466892.06E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002495.9E-111461IPR001005SANT/Myb domain
CDDcd001672.41E-41661No hitNo description
PROSITE profilePS5129426.43262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2665116IPR009057Homeodomain-like
SMARTSM007174.4E-1666114IPR001005SANT/Myb domain
PfamPF002495.0E-1667110IPR001005SANT/Myb domain
CDDcd001675.46E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TETEENQIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKPLE QNENSGDDKD EITLESNLSK EQEERQPEVK SIDEDNDAKQ DFVSTEEIRN  180
EVELTLDETN DLLNNYDIWC GSLDLGSWMN QETNTNTSYS STSFSLENSS NPSMGESPSL  240
QWVESVDSML SWDGFNHLEQ DLFFLENSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347371e-45KM034737.1 Jatropha curcas clone JcMYB118 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895144.10.0myb-related protein 315
SwissprotP813941e-83MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2N9EVI31e-173A0A2N9EVI3_FAGSY; Uncharacterized protein
STRINGPOPTR_0001s36220.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-85myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]