PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15610-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 576aa    MW: 64307.1 Da    PI: 4.3404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15610-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52101371128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 
                                                   l+pGfrFhPtdeelv +yLk+kv +k++++ + i+ vdiyk+ePwdLp k k+k+++ ewyfFs 
  maker-scaffold15610-augustus-gene-0.4-mRNA-1  10 LAPGFRFHPTDEELVRYYLKRKVLNKPFKF-DPISVVDIYKSEPWDLPsKsKLKSRDLEWYFFSA 73 
                                                   579**************************9.99**************95247777777******* PP

                                           NAM  64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                    dkky +++r+nrat++gyWk+tgkd++v + ++++vg+kktLv+++grap+g +++Wvmheyrl
  maker-scaffold15610-augustus-gene-0.4-mRNA-1  74 LDKKYGNSSRTNRATEKGYWKTTGKDRPVRQ-NSRTVGMKKTLVYHNGRAPRGARSNWVMHEYRL 137
                                                   ******************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-608160IPR003441NAC domain
PROSITE profilePS5100557.08210160IPR003441NAC domain
PfamPF023654.1E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MGRDDSATSL APGFRFHPTD EELVRYYLKR KVLNKPFKFD PISVVDIYKS EPWDLPSKSK  60
LKSRDLEWYF FSALDKKYGN SSRTNRATEK GYWKTTGKDR PVRQNSRTVG MKKTLVYHNG  120
RAPRGARSNW VMHEYRLIDE DLEKSGLVLD AFVLCRIFQK SGTGPKNGEQ YGAPFVEEEW  180
EDDDVEAFMP GEVAAAAAEE VMVGDDAFVE TNDLDQNLEI NIPSEYPPPL NFYYGETSNH  240
AEHSGEFLED DQKPIIGTGE TFEPQFDQFL NIPEQYEMGT NPVKDEYYVE SSNNVNPAEV  300
NYSLGGFVES SNNNVNPAEV NYSFDEFYMD AADNAPMGDG LYLEANDLSN PVEADSEGFD  360
MLDEYLTFFD ADDDNSQHLT FDPSEIMGTD NSVFDQAPQK HENGGTDQVF NETLHLPEAQ  420
GNNDASSSKH KPEATIYESD DKHPFVKRAS QMLGSIPAPP AFAAEFPAKD HAALRLHSAA  480
QSSSSAHVTA GMIRIRNMTL TGNGMDWSLG KNDDVGLLLS FVLPQADMSS ANSVPLAGSL  540
TGKGSSVVSR CWCFFLFFWV LLLSVSFKIG SYVCIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4731607168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879666.10.0NAC domain-containing protein 53-like
SwissprotQ84K001e-167NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2N9IUB60.0A0A2N9IUB6_FAGSY; Uncharacterized protein
STRINGEMJ200710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-139NAC domain containing protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]