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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold15291-snap-gene-0.9-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 241aa MW: 28153.4 Da PI: 8.5518 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold15291-snap-gene-0.9-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 50.2 | 4.7e-16 | 4 | 83 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
+r+++p kf++e+g + s+ ++l + g +W+v l +k + +++ +GWk+Fv+ ++ g f+vFk+
maker-scaffold15291-snap-gene-0.9-mRNA-1 4 HRMRIPEKFVREFGDE--LSTSVKLIVTYGCVWQVGL--EKANKNIWFCDGWKDFVEYYSICYGYFLVFKY 70
69***********966..8899***************..999999************************** PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+g+s+f +v vf+k
maker-scaffold15291-snap-gene-0.9-mRNA-1 71 QGNSNF--HVLVFDK 83
**9999..****998 PP
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2 | B3 | 50.6 | 3.4e-16 | 168 | 232 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+ +l +++gr+W v++ y+ +s+++ +++GW eF++ n+L egD++vF+l++r+ l+v++fr
maker-scaffold15291-snap-gene-0.9-mRNA-1 168 QIAKLANSEGRQWPVNCYYKPSSSAMNMGQGWIEFARHNDLAEGDVCVFELIKRKPVVLNVSMFR 232
468999***********99**********************************999999999987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MPVHRMRIPE KFVREFGDEL STSVKLIVTY GCVWQVGLEK ANKNIWFCDG WKDFVEYYSI 60 CYGYFLVFKY QGNSNFHVLV FDKTATEIQY PLSMNCKLED QADIMELEDA NISMHHKNDN 120 EMSSKGKFKM SRGRERAIQA ARMFKPKNPS FIGIMRHYNM SSRYMHDQIA KLANSEGRQW 180 PVNCYYKPSS SAMNMGQGWI EFARHNDLAE GDVCVFELIK RKPVVLNVSM FRVVDFDIPA 240 K
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 4e-19 | 123 | 236 | 21 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-19 | 123 | 236 | 21 | 145 | B3 domain-containing transcription factor VRN1 |