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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold15072-augustus-gene-0.5-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
C2H2 |
Protein Properties |
Length: 325aa MW: 35097.6 Da PI: 4.5784 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold15072-augustus-gene-0.5-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 299 | 322 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ C+k+F + L++H + H
maker-scaffold15072-augustus-gene-0.5-mRNA-1 299 FSCQTCSKTFGSEVGLQSHTKAkH 322
89*****************99877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
VEVKAGQPLK VSPGEEKLIH LSQASLGESK NKGNESTPIF VKFGDQKLVL GTLSQEKFPQ 60 LSFDLVFEKE FELSHNWKNG SVYFAGYKAA AMYEEYPLHL PNFFSKLSLF PSKLSVVSLT 120 LWSLVFATEP ATDSDMDSFD DEEEEELPLN IAENGKAGPK VAAVKSIAAP SEKQVKISEP 180 SKDDEDNDSS DSSDEDDDDD ISGDEDEDMS FGSAEDDDES DEEPEETPKK VESSKKRPSE 240 SATKTPVPAK KAKAATPQKT DGKKVGGHTA TPHPSKKAAK TPATSEQSKQ KSPKSGGAFS 300 CQTCSKTFGS EVGLQSHTKA KHAGN
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT946629 | 5e-61 | KT946629.1 Quercus velutina isolate 2906 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946630 | 5e-61 | KT946630.1 Quercus velutina isolate 2907 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946632 | 5e-61 | KT946632.1 Quercus velutina isolate 2910 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946633 | 5e-61 | KT946633.1 Quercus velutina isolate 2919 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946634 | 5e-61 | KT946634.1 Quercus ellipsoidalis isolate JW50 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946635 | 5e-61 | KT946635.1 Quercus ellipsoidalis isolate JW51 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946636 | 5e-61 | KT946636.1 Quercus ellipsoidalis isolate JW52 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946637 | 5e-61 | KT946637.1 Quercus ellipsoidalis isolate JW53 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946638 | 5e-61 | KT946638.1 Quercus rubra isolate 2898 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946639 | 5e-61 | KT946639.1 Quercus velutina isolate 2521 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946640 | 5e-61 | KT946640.1 Quercus coccinea isolate 2582 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946641 | 5e-61 | KT946641.1 Quercus coccinea isolate 2583 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946642 | 5e-61 | KT946642.1 Quercus coccinea isolate 2584 histone deacetylase-like protein gene, partial sequence. |
GenBank | KT946643 | 5e-61 | KT946643.1 Quercus rubra isolate PR01 histone deacetylase-like protein gene, partial sequence. |