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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold14929-snap-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 22235.1 Da PI: 8.8879 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 2 | 36 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d+++ +G+g W++Ia+t ++R++k+c++rw +yl maker-scaffold14929-snap-gene-0.3-mRNA-1 2 DYIRVHGKGKWSRIAKTTDLKRCGKSCRLRWINYL 36 78999****************************97 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 6.1e-19 | 42 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++++++lG++ W++Ia +++ gRt++q+k++w+++l maker-scaffold14929-snap-gene-0.3-mRNA-1 42 RGDFSEEEEDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 87 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-17 | 1 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.158 | 1 | 36 | IPR017930 | Myb domain |
SMART | SM00717 | 20 | 2 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-4 | 2 | 36 | No hit | No description |
Pfam | PF00249 | 2.7E-7 | 2 | 36 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.16E-23 | 2 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.534 | 37 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-16 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-18 | 42 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 44 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.70E-13 | 45 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDYIRVHGKG KWSRIAKTTD LKRCGKSCRL RWINYLSPGV KRGDFSEEEE DLIIRLHNLL 60 GNRWSLIAGR VPGRTDNQVK NHWNTHLCKK LGIKKGKTKV GSSLPSLSKK MGNNPTNVSL 120 ESNFESPSNC NGETEAKTAT KDDSQSMCRF ASTQEATTEN NCESSFWLSK DDLNLLTSFL 180 MEPLNSYSHE FVWDCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-23 | 1 | 91 | 39 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023923248.1 | 1e-124 | transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 3e-57 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2N9H649 | 1e-108 | A0A2N9H649_FAGSY; Uncharacterized protein | ||||
STRING | VIT_17s0000g08480.t01 | 9e-72 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 9e-54 | myb domain protein 66 |