PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 243aa MW: 27939.3 Da PI: 6.6869

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold14402-augustus-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.4	1.8e-46	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfF 61 lppG+rF Pt+eelv++yL++k+egk+ ++++vi+ + iy++ePw+Lpk +++a++++w+fF maker-scaffold14402-augustus-gene-0.4-mRNA-1 4 LPPGYRFYPTEEELVSFYLHNKLEGKRPDVQRVIPVISIYDIEPWHLPKvsgeMCQADTEQWFFF 68 79**************************99************657765666888* PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 ++r++++a+g r++r+t+sgyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+ey maker-scaffold14402-augustus-gene-0.4-mRNA-1 69 APRQEREARGGRPSRTTDSGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEY 133 *************************************************************** PP NAM 127 rl 128 r+ maker-scaffold14402-augustus-gene-0.4-mRNA-1 134 RA 135 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-49	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	49.412	4	162	IPR003441	NAC domain
Pfam	PF02365	2.2E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEQLPPGYRF YPTEEELVSF YLHNKLEGKR PDVQRVIPVI SIYDIEPWHL PKVSGEMCQA 60 DTEQWFFFAP RQEREARGGR PSRTTDSGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEEVP SSSSTVVPKL RHEFSLCRVY VVSGSFRAFD RRPEMSTRET 180 PQLGDNRAAT SSQKTTMVEK TSSSETSHSG GDHVDLPEID GFDWGINDGL EQPLWEWEQL 240 NWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-36	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-36	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-36	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-36	4	160	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	7e-36	4	160	20	166	NAC domain-containing protein 19
3swm_B	7e-36	4	160	20	166	NAC domain-containing protein 19
3swm_C	7e-36	4	160	20	166	NAC domain-containing protein 19
3swm_D	7e-36	4	160	20	166	NAC domain-containing protein 19
3swp_A	7e-36	4	160	20	166	NAC domain-containing protein 19
3swp_B	7e-36	4	160	20	166	NAC domain-containing protein 19
3swp_C	7e-36	4	160	20	166	NAC domain-containing protein 19
3swp_D	7e-36	4	160	20	166	NAC domain-containing protein 19
4dul_A	7e-36	4	160	17	163	NAC domain-containing protein 19
4dul_B	7e-36	4	160	17	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913916.1	1e-176	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-100	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2N9ISJ3	1e-159	A0A2N9ISJ3_FAGSY; Uncharacterized protein
STRING	cassava4.1_014914m	1e-127	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-101	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]