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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold13933-snap-gene-0.8-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 395aa MW: 45341.2 Da PI: 9.8127 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold13933-snap-gene-0.8-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 49.4 | 8.1e-16 | 9 | 85 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
++pkkf++++g + s + l+ ++g +W+vk+ k++g+++++ GW eF++ + L g f+v++++g+
maker-scaffold13933-snap-gene-0.8-mRNA-1 9 RIPKKFISKYGVD--LSNMAFLTIPNGTKWKVKM--AKRDGEVWFQHGWCEFARFHALAPGHFLVLRYEGN 75
69********877..787899999**********..**********************************9 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
s f +v +f++
maker-scaffold13933-snap-gene-0.8-mRNA-1 76 SHF--YVLIFDA 85
999..**99987 PP
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2 | B3 | 55.8 | 8.3e-18 | 229 | 326 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69
f v ps+v + l++p +fa++++ k ++ ++l +g + +vk+++ k + + +++GWk+F+
maker-scaffold13933-snap-gene-0.8-mRNA-1 229 FMVVIQPSYVYPGDSLSVPSSFAKKYMRK-MSGEFVILWYFNGGTCSVKFSFYKAQTKAKFRQGWKKFA 296
6678889*******************755.4566899999***************************** PP
HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 70 kangLkegDfvvFkldgrsefelvvkvfrk 99
++n+Lk+gD+++F+l++ e ++v +fr+
maker-scaffold13933-snap-gene-0.8-mRNA-1 297 RDNNLKVGDVCIFELINGVEVAFKVAIFRA 326
****************87666689999986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MLWRFFLQRI PKKFISKYGV DLSNMAFLTI PNGTKWKVKM AKRDGEVWFQ HGWCEFARFH 60 ALAPGHFLVL RYEGNSHFYV LIFDATATEI DYPLDDQHNI LRMEDIERDD IDNSVEIMDG 120 FIPSQKTREK SPLPCPLPHK RAKTNPRSSV LQAGDTHFRL ELTKSKGSVL EKSKMNAGSL 180 TEAHFSAEEY SGATKRCPKS EVIERTLSAS EKDRALQRVR AFESKNPFFM VVIQPSYVYP 240 GDSLSVPSSF AKKYMRKMSG EFVILWYFNG GTCSVKFSFY KAQTKAKFRQ GWKKFARDNN 300 LKVGDVCIFE LINGVEVAFK VAIFRAANDI DCPLLNGKEL LDSDQLMGLE EIDFNAKAAR 360 MSTNQRRLKA KALVKNQEYK ALEKKQELMT TNAFH
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 6e-23 | 204 | 326 | 24 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-23 | 204 | 326 | 24 | 142 | B3 domain-containing transcription factor VRN1 |