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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold13888-augustus-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27852 Da PI: 4.8549 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+++G g+W++++r+ g++R++k+c++rw +yl maker-scaffold13888-augustus-gene-0.3-mRNA-1 12 KGPWTPEEDRLLSEYVNLYGEGRWSSVSRCTGLNRSGKSCRLRWVNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 66 | 109 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++ maker-scaffold13888-augustus-gene-0.3-mRNA-1 66 GQLTPLEEGIVVEMHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109 667999***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.229 | 7 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 7 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.56E-30 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-17 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-12 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 63 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.517 | 64 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.5E-12 | 65 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-8 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGWGIPEQEW RKGPWTPEED RLLSEYVNLY GEGRWSSVSR CTGLNRSGKS CRLRWVNYLR 60 PGLKKGQLTP LEEGIVVEMH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKGKPSRKQ 120 DMEKVQTLKQ NQAPKKQEQE PQEDSMKGET ISDEDTSDDQ MSSEVQEMIK EYPTLEDQCF 180 SVMSQDVASW LDTIREDDFC FSLWNLDDPK GNMDHDHQPT VFSCAADSNS FYNSGDFIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 4 | 113 | 1 | 107 | B-MYB |
1h8a_C | 4e-25 | 12 | 113 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP855464 | 7e-65 | KP855464.1 Quercus variabilis microsatellite Qv1424 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912232.1 | 1e-132 | transcription factor MYB48-like | ||||
TrEMBL | A0A2N9HUW3 | 1e-115 | A0A2N9HUW3_FAGSY; Uncharacterized protein | ||||
STRING | EOY03785 | 4e-84 | (Theobroma cacao) | ||||
STRING | cassava4.1_029259m | 1e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 4e-67 | myb domain protein 121 |