PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13838-snap-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 681aa    MW: 77457.9 Da    PI: 5.1025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13838-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-5461531128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................... 49 
                                               lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp                     
  maker-scaffold13838-snap-gene-0.5-mRNA-1   6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPVthghckfygivnltnlnitg 73 
                                               79****************************.99***************55899*999999999887665 PP

                                       NAM  50 ..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                                                  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++++vg+kktLv+y+grap+g
  maker-scaffold13838-snap-gene-0.5-mRNA-1  74 ksLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHG 141
                                               543334777**************************************.9999***************** PP

                                       NAM 117 ektdWvmheyrl 128
                                                +tdWvmheyrl
  maker-scaffold13838-snap-gene-0.5-mRNA-1 142 ARTDWVMHEYRL 153
                                               **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-584176IPR003441NAC domain
PROSITE profilePS5100558.7386176IPR003441NAC domain
PfamPF023651.3E-297153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPVTHGHCKF  60
YGIVNLTNLN ITGKSLLPSK DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS  120
QTRAVGMKKT LVYYRGRAPH GARTDWVMHE YRLDERECEI PSGLQDAYAL CRVFKKSATG  180
PKIGEHYAIP TTNYQLTSDH SSSVELYSEG RCEDLESTDY RMPYDNSCSP NMVAGSSHDI  240
SGTRDGKWMQ FLSEDAFNFT PTPYPNYGNV SYPPSKVDIT LECARLQHRF SLPSLAVEDF  300
PQVGFTDFKV SQLTPICESA SETDILQEIL SVAQASQELI NQNNFPGTWG GSSAPDDDFS  360
FMVGRDTYNQ VNDVSAERYI DKPWEDPNTR SIQIGDLDED FKTERMTENL RWVGMSDKDL  420
EKSFIEEHKI VPIEDISNFP RREEHEFQGE SGNDQSCKEF NDSEMNNFQL GFIDEPNENF  480
LDDGNLEDYS SSPSFEVIEE VKVNHGMFIS TRQVAETFFH QIVPSQTVKV HLNPVLMSSF  540
SIEKEDAQIT AENRASFLRK FKAFARGKFV AFTKAVNPCA IMCVVTLLLV HIYLGEHMEE  600
EKLMDGFSST DSVKEEGCSN NGKSKKMPGR IKCNDKRGQV SMVTNTEGGN SFSAFFKRIE  660
IFLTVSLALC TMWANHIIPR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51217611168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872288.10.0NAC domain-containing protein 86-like
TrEMBLA0A2N9FPF70.0A0A2N9FPF7_FAGSY; Uncharacterized protein
STRINGVIT_04s0079g00280.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-167NAC domain containing protein 28