PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13555-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 395aa    MW: 43390.2 Da    PI: 7.324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13555-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13323368655
                                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  maker-scaffold13555-augustus-gene-0.6-mRNA-1 323 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 368
                                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16320384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-12321370No hitNo description
Gene3DG3DSA:4.10.280.107.0E-15322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSNTHDNYL PQHQPSSGLL RFRSAPSSVL ANFMETEAEV SADSDANKIN FTEGSDSERL  60
ISRFLNYGTS NTDSIAMKRV SSNSHSQAQQ QGYSASLPPH YPRQSLSPTA MDDDDGSYGL  120
VGSMAMDHDV QSKTGNPIII RQSSSPAGLF SHLSVQNGYA VVKGIGNYSR VNGTNGDVSP  180
STDRLKSQLS FSPRFPSSLG MLSQISEIGS ENLGANSPDD GKLGNGSVDA QFYGPGVPYS  240
SWNDPSHFTE NFTVMKREQD DDGKLFSANQ NGGLGNRVNM LSHHLSLPKT SSEMVAMEKF  300
LQFRDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA  360
VEYIKDLQKQ FKTLSDNKAN CKCLSMQNPV QNQIA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897461.10.0transcription factor bHLH130
SwissprotQ66GR31e-106BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2N9GJU10.0A0A2N9GJU1_FAGSY; Uncharacterized protein
STRINGEOY094231e-162(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]