PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold12866-augustus-gene-0.2-mRNA-2

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 477aa MW: 50787.8 Da PI: 6.5999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold12866-augustus-gene-0.2-mRNA-2	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	260	305	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq maker-scaffold12866-augustus-gene-0.2-mRNA-2 260 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 305 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.64E-13	253	309	No hit	No description
SuperFamily	SSF47459	5.89E-17	253	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	257	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-9	260	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MQGMNSLLNP TQISLQDLQN HHHQQQQQQQ HQQQPQQIQN SQIQHLHNSH FDPNNTHDDF 60 LEQMFSAIPS CSWPDLNPKT PWDLKPRDLS DETPPSNPDN NVPYQFDHDS STLASKLRNH 120 QISGATKSSA AAAAAALMLQ QQLFMSRGAG ESGLIQMPLS LGASDDVVDG SSSFKSPNTG 180 GEGSVQALYN GFTGSLHGPG QTPNQAQHFH HPQGGQVQGQ NYGAPSGVMN QGPASGSAGS 240 APAQPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY 300 VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGGGDCIQA GTNSGALGRN SNGNQTASSN 360 DSLTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN AMINNHNSNS 420 SNNNNNNVNN NSNNPLLQSN GEGPSSPSMS VLTVQSATMG NGGGDASVKD NTSVSKP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MQGMNSLLNP TQISLQDLQN HHHQQQQQQQ HQQQPQQIQN SQIQHLHNSH FDPNNTHDDF  60
LEQMFSAIPS CSWPDLNPKT PWDLKPRDLS DETPPSNPDN NVPYQFDHDS STLASKLRNH  120
QISGATKSSA AAAAAALMLQ QQLFMSRGAG ESGLIQMPLS LGASDDVVDG SSSFKSPNTG  180
GEGSVQALYN GFTGSLHGPG QTPNQAQHFH HPQGGQVQGQ NYGAPSGVMN QGPASGSAGS  240
APAQPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY  300
VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGGGDCIQA GTNSGALGRN SNGNQTASSN  360
DSLTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN AMINNHNSNS  420
SNNNNNNVNN NSNNPLLQSN GEGPSSPSMS VLTVQSATMG NGGGDASVKD NTSVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874690.1	0.0	transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2N9G1V1	0.0	A0A2N9G1V1_FAGSY; Uncharacterized protein
STRING	VIT_11s0037g00040.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-59	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]