PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12804-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 291aa    MW: 32405.5 Da    PI: 7.1039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12804-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191764148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  rg+W++eEd+llv++++++G g+W+t +++ g+ R++k+c++rw +yl
  maker-scaffold12804-augustus-gene-0.6-mRNA-1 17 RGAWSPEEDQLLVQYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 64
                                                  89******************************99************97 PP
2Myb_DNA-binding53.36.2e-1770115148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                   rg++T+eE++ ++++  +lG++ W++Ia+ m+ gRt++++k++w+++l
  maker-scaffold12804-augustus-gene-0.6-mRNA-1  70 RGPFTAEEEDSIIQLQGMLGNR-WAAIASQMP-GRTDNEIKNYWNTHL 115
                                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-25867IPR009057Homeodomain-like
PROSITE profilePS5129424.6221268IPR017930Myb domain
SuperFamilySSF466892.25E-3115111IPR009057Homeodomain-like
SMARTSM007173.8E-151666IPR001005SANT/Myb domain
PfamPF002498.3E-181764IPR001005SANT/Myb domain
CDDcd001672.53E-121964No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2568118IPR009057Homeodomain-like
SMARTSM007173.1E-1669117IPR001005SANT/Myb domain
PROSITE profilePS5129419.57369119IPR017930Myb domain
PfamPF002491.7E-1570115IPR001005SANT/Myb domain
CDDcd001671.43E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVKMGRAPCC DKDGVKRGAW SPEEDQLLVQ YINKHGHGSW RTLPKHAGLL RCGKSCRLRW  60
INYLRPDIKR GPFTAEEEDS IIQLQGMLGN RWAAIASQMP GRTDNEIKNY WNTHLKKRPL  120
CSVPSPWVHK PSSKPETSNV KSESPSTRHM VQWESARVEA EARMSMELSL LDSSSMIKTE  180
CDYFLRLWSS EVGESFRNGN GKDGGVCQSP VSLKSSSTKC GSGSDVTIQV INTRTSACTN  240
TKPEQADSCK PKVEDVMATS DSHTSYDLID SSDSALELLL DFPDGEDSFQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26171187107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886903.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-102MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2N9GTC31e-171A0A2N9GTC3_FAGSY; Uncharacterized protein
STRINGcassava4.1_026502m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-96myb domain protein 17