PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 551aa MW: 63477.7 Da PI: 7.845

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold12279-snap-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.8e-27	54	139	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+ maker-scaffold12279-snap-gene-0.4-mRNA-1 54 FYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKR 118 **************************************999877....9************** PP FAR1 71 ekdgkwevtkleleHnHelap 91 + +gkw+++++++eHnHel p maker-scaffold12279-snap-gene-0.4-mRNA-1 119 RPNGKWYIYSFVKEHNHELLP 139 ****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-24	54	139	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.658	339	375	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-9	345	373	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	350	377	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MEIYTLPMGG DSLKCKVDLN IPTTIMDSNV IMDNAIIEPR DDMEFDSHED AYTFYKEYAK 60 SVGFGTAKLS SRRSRASREF IDAKFSCIRY GNKQQSDDAI NPRPSPKIGC KASMHVKRRP 120 NGKWYIYSFV KEHNHELLPA QAHFFRSHRN ADPLKNDVRV RRRKNLTAVS KLFSAYQNSW 180 TEEQFERRWW KLINRFNLRE LEWVQSLYED RTHWVPTFMK DLSFAGLSTP LRSESLNSVF 240 DKYIQGETSL IDFMKRYREI LEDRYEEEAK ANFDAWHETP ELKSPSPFEK QMSLVYTHEI 300 FKKFQVEVLG AAACHLKKEN EDETTTIYTV KDFEDNQNYA VEWNESKLDI YCSCRSFEYK 360 GYLCRHAIVV LQMSGVFNIP SKYILQRWTN AAKSRHSIGE RLDEVQSKVR RFNDLCRRAI 420 ILGEEGSLSP ESYNIALCAI KEALKQCAIV NNPVENDTRN MTSTTPAICA VEVNQCGNPS 480 NEIVPDPKVI NGNKAPRRAG AGKEVASNEN SSSNKGKVPQ PEAVNIGIQD GFLQMMHVHT 540 HSCWRSGGND L

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MEIYTLPMGG DSLKCKVDLN IPTTIMDSNV IMDNAIIEPR DDMEFDSHED AYTFYKEYAK  60
SVGFGTAKLS SRRSRASREF IDAKFSCIRY GNKQQSDDAI NPRPSPKIGC KASMHVKRRP  120
NGKWYIYSFV KEHNHELLPA QAHFFRSHRN ADPLKNDVRV RRRKNLTAVS KLFSAYQNSW  180
TEEQFERRWW KLINRFNLRE LEWVQSLYED RTHWVPTFMK DLSFAGLSTP LRSESLNSVF  240
DKYIQGETSL IDFMKRYREI LEDRYEEEAK ANFDAWHETP ELKSPSPFEK QMSLVYTHEI  300
FKKFQVEVLG AAACHLKKEN EDETTTIYTV KDFEDNQNYA VEWNESKLDI YCSCRSFEYK  360
GYLCRHAIVV LQMSGVFNIP SKYILQRWTN AAKSRHSIGE RLDEVQSKVR RFNDLCRRAI  420
ILGEEGSLSP ESYNIALCAI KEALKQCAIV NNPVENDTRN MTSTTPAICA VEVNQCGNPS  480
NEIVPDPKVI NGNKAPRRAG AGKEVASNEN SSSNKGKVPQ PEAVNIGIQD GFLQMMHVHT  540
HSCWRSGGND L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023916476.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Swissprot	Q6NQJ7	1e-151	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2H5NMJ7	0.0	A0A2H5NMJ7_CITUN; Uncharacterized protein
STRING	XP_008234547.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-153	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]