 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold11791-augustus-gene-0.2-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
LBD |
| Protein Properties |
Length: 177aa MW: 19966.1 Da PI: 5.3086 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold11791-augustus-gene-0.2-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 128.8 | 2.5e-40 | 14 | 111 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65
+CaaC++lrrkC++dC lapyfpae+++kfa vhk+FGasnv+k+++ ++e++reda++++vyeA
maker-scaffold11791-augustus-gene-0.2-mRNA-1 14 PCAACRMLRRKCESDCLLAPYFPAEEAEKFAGVHKVFGASNVIKMIQMVDETRREDAVKAIVYEA 78
7**************************************************************** PP
DUF260 66 earardPvyGavgvilklqqqleqlkaelallk 98
ar+rdPvyG++g i++lq+ +++lk++l+++
maker-scaffold11791-augustus-gene-0.2-mRNA-1 79 TARLRDPVYGSAGAIFHLQKMVQELKVQLESIS 111
****************************99765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MGFQMVAQVR AHQPCAACRM LRRKCESDCL LAPYFPAEEA EKFAGVHKVF GASNVIKMIQ 60
MVDETRREDA VKAIVYEATA RLRDPVYGSA GAIFHLQKMV QELKVQLESI SARVLESQAQ 120
RDELLGLLRN VNHLDRLVHP TNAPVVDEGS FMLDDAVLMA YDPVKFPAEC DWFLLEE
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM444013 | 4e-35 | AM444013.2 Vitis vinifera contig VV78X034710.3, whole genome shotgun sequence. |
