PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11782-augustus-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 520aa    MW: 56613.9 Da    PI: 7.0075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11782-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09326373455
                                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  maker-scaffold11782-augustus-gene-0.3-mRNA-1 326 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 373
                                                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17320390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-10320377No hitNo description
Gene3DG3DSA:4.10.280.105.3E-17322392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6326373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MENDFFLNPA LHFEQPSASI MPTWRSLSAA MEIQIQGTEQ SQDCFFSPNT DQSVHFDSAL  60
SSMVSSPAAS TNNVSNDSFV IRELIGKLGN IGNNRANNSC YSTPLNSPPK QLTLPMTDHL  120
VKENLPSLGK SMPLNSSVAE FSADPGFAER AARFSRFGSR SFNGRTGQLG LNNAEFQKKP  180
NILMANGNQN LPRVSSSPSL KANGSQMGAQ ENKNSSPLQD SQEESTISEQ NPNGDSNSKK  240
RKAASRGKKE PPSSSPSANA TKVGEANDNS KAKRSKPNED NGNENGPVKA EDETQKSSAV  300
KTSAKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL  360
MLDEIINYVQ SLQRQVEFLS MKLASVNTKM DASMDSLFSK DIFQSNNNLP HPIFPLDSSA  420
SAFYGQQPQQ NPALHSNISN GTVTQCSVDP IDTLLCQSLS MQLLPLNGFS ESVAQFPNFG  480
EDDLQTIVQM GLGPNPSRET VLQPQSFHGS NQAPHMKVEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876792.10.0transcription factor bHLH62-like
TrEMBLA0A2N9EM120.0A0A2N9EM12_FAGSY; Uncharacterized protein
STRINGEMJ023810.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-103bHLH family protein