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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold11527-augustus-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 92736.6 Da PI: 6.4261 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ maker-scaffold11527-augustus-gene-0.6-mRNA-1 26 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 5789****************************************************97 PP | |||||||
2 | START | 152.8 | 2.9e-48 | 164 | 367 | 2 | 200 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHC CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveell 66 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s++++g a+ra+g+v +++ +e+l maker-scaffold11527-augustus-gene-0.6-mRNA-1 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCNGVAARACGLVSLEPT-KIAEIL 227 7899******************************************************.777777 PP CCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS START 67 ddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128 +d++ W + +++ e+ g g+++l +++++a+++l+p Rdf+++Ry+ +l g++v++++ maker-scaffold11527-augustus-gene-0.6-mRNA-1 228 KDRPSWFRECRSLEVFTMFPAGngGTIELVYTQTYAPTTLAPaRDFWTLRYTTSLDNGSLVVCER 292 7777***********999999999***************************************** PP EEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS START 129 Svdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190 S++ p+ s++vRae+lp g+li+p+++g+s +++v+h +l++++++++lr+l++s+ + maker-scaffold11527-augustus-gene-0.6-mRNA-1 293 SLSGSGAGPNaaaASQFVRAEMLPCGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKV 357 ***99999999999*************************************************** PP HHHHHHHHHT CS START 191 egaktwvatl 200 ++k++ a l maker-scaffold11527-augustus-gene-0.6-mRNA-1 358 VAQKMTIAIL 367 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.127 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-14 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.29E-16 | 24 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.26E-15 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.71E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 25.29 | 154 | 387 | IPR002913 | START domain |
CDD | cd08875 | 1.13E-66 | 158 | 379 | No hit | No description |
SMART | SM00234 | 1.5E-37 | 163 | 373 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.8E-20 | 163 | 349 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.18E-33 | 163 | 355 | No hit | No description |
Pfam | PF01852 | 8.8E-46 | 164 | 367 | IPR002913 | START domain |
Pfam | PF08670 | 1.6E-49 | 704 | 847 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MAMAVAQQHR ESSSGSISRH LDAGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENGYMRQQLH TTSAATTDAS CDSVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA 180 VDWVQMPGMK PGPDSVGIFA ISQSCNGVAA RACGLVSLEP TKIAEILKDR PSWFRECRSL 240 EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLDNGSLVVC ERSLSGSGAG 300 PNAAAASQFV RAEMLPCGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ 360 KMTIAILSVK ALRYIRQIAQ ETSGEVVYGL GRQPAVLRTF SQRLSRGFND AVNGFNDDGW 420 SLINSDGAED VIIAVNSTKN LSATSNPANS LSFVGGILCA KASMLLQNVP PAVLVRFLRE 480 HRSEWADFNV DAYSAASLKA GSYAYPGMRP TRFTGSQIIM PLGHTIEHEE LLEVIRLEGH 540 SLPQEDAFAS RDIHLLQICS GVDENAVGAC SELVFAPIDE MFPDDAPLLP SGFRIIPLDS 600 KTSDAKDSLS THRTLDLTSS LEVGPATNHA AGDVPSCHYS RSVLTIAFQF PFDSSLQDNV 660 ATMARQYVRS VISSVQRVAM AISPTGLSPA MGPKLSPGSP EALTLAHWIC QSYSYHIGAD 720 LLRSDSLGGD SVLKHLWNHQ DAILCCSLKT VPVFIFANQT GLDMLETTLV ALQDITLDKI 780 FDESGRKALC ADFAKLMQQG FTYLPGGICM STMGRHVSYE QAVAWKVLAA DETTVHCLAF 840 SFVNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023926843.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A2N9HWK2 | 0.0 | A0A2N9HWK2_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_001649m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6633 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |