PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11466-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 297aa    MW: 33162.6 Da    PI: 8.0407
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11466-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06326226
                                              -S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                              k++lC+ffa  G C  G+ C F+H+
  maker-scaffold11466-snap-gene-0.6-mRNA-1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                                              99****6666.*************5 PP
2zf-CCCH23.11.3e-073454526
                                              --SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                              +C ++++ G C yG+rC++ H+
  maker-scaffold11466-snap-gene-0.6-mRNA-1 34 ICTYYQK-GLCAYGSRCRYEHV 54
                                              8******.***********997 PP
3zf-CCCH192.4e-06143165326
                                               S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                               +++C+ fa+ G C++G++C+  Hg
  maker-scaffold11466-snap-gene-0.6-mRNA-1 143 HPICS-FAAAGNCPRGEKCPHLHG 165
                                               68999.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4328IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-42955IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1362956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53153IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-53354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497140167IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4146165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.83E-14197273No hitNo description
Gene3DG3DSA:3.30.40.103.6E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00156208268No hitNo description
SMARTSM001842.2E-7209266IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.371209267IPR001841Zinc finger, RING-type
PfamPF000972.3E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PHNICTYYQK GLCAYGSRCR YEHVKAARSH  60
SSASSSSTNA RQSLVSDIVP LGNSTRSVFG GLTPVPGSPM ELSASSRPFI PPTKPAWNQE  120
YGHHDSLDDW DIGEASSIRP SDHPICSFAA AGNCPRGEKC PHLHGDLCPT CGKHCLHPFR  180
PEEREEHLKS CEKKQKHLEA LKHSQEIECS VCLERVLSKP TAAERKFGLL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY SSKEEKQEIV DSYKAKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891309.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-138C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2N9ITR60.0A0A2N9ITR6_FAGSY; Uncharacterized protein
STRINGXP_002526765.11e-166(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-126C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]