PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold11066-snap-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | VOZ | ||||||||
Protein Properties | Length: 499aa MW: 55976.6 Da PI: 5.9794 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 425.9 | 6.4e-131 | 233 | 449 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsa 68 pppsaflgpkcalwdc+rpaqgs +qdycss ha+lalneglpg+tp+lrp+gi+lkdg+lf+alsa maker-scaffold11066-snap-gene-0.11-mRNA-1 233 PPPSAFLGPKCALWDCFRPAQGSTLCQDYCSSGHAVLALNEGLPGMTPILRPGGISLKDGPLFSALSA 300 89****************************************************************** PP VOZ 69 kvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrg 136 k++gkevgip+cegaa++kspwna+elfdl++l+getirewlffdk rrafesgnrkqrslpd++grg maker-scaffold11066-snap-gene-0.11-mRNA-1 301 KTHGKEVGIPKCEGAANTKSPWNAPELFDLAFLQGETIREWLFFDKSRRAFESGNRKQRSLPDHNGRG 368 ******************************************************************** PP VOZ 137 whesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskds 204 whesrkqvmke+gg+krsyymdpqp+++ ewhlyeyei++ da+alyrlelk+vdekks+kgk+++ds maker-scaffold11066-snap-gene-0.11-mRNA-1 369 WHESRKQVMKEYGGQKRSYYMDPQPLNCREWHLYEYEISNHDACALYRLELKHVDEKKSPKGKLTNDS 436 ******************************************************************** PP VOZ 205 ladlqkklgrlta 217 ladlqkk+grlta maker-scaffold11066-snap-gene-0.11-mRNA-1 437 LADLQKKMGRLTA 449 ***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MPKGSKSKCG SVSHQLLKEK AKNRVNDLEG MFTDLQSARK ERRSNDIAVL EERVHQMLRE 60 WKSELNDPSP ASSLVGGSLG SFPEELEQLL QHWGEEDDAT SPLKELAPLK REVDLQNFHD 120 SDLTAFPEDC FINEQPKEDG FQGFDQCKAF VSSVHNKVVD NSQFTNQLDS HQFNIPQDFE 180 QITAVNNSNL STQLGCHQFD LHQDFDYGLL IGANDTEQCE QDTMPIIMPN ICPPPSAFLG 240 PKCALWDCFR PAQGSTLCQD YCSSGHAVLA LNEGLPGMTP ILRPGGISLK DGPLFSALSA 300 KTHGKEVGIP KCEGAANTKS PWNAPELFDL AFLQGETIRE WLFFDKSRRA FESGNRKQRS 360 LPDHNGRGWH ESRKQVMKEY GGQKRSYYMD PQPLNCREWH LYEYEISNHD ACALYRLELK 420 HVDEKKSPKG KLTNDSLADL QKKMGRLTAE GSPDNGHPIK SRTKVNKRPD AGNANFAQNQ 480 TTLNCEPLTD GLSAPRYNP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023905525.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-173 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2I4EY07 | 0.0 | A0A2I4EY07_JUGRE; transcription factor VOZ1-like | ||||
STRING | XP_008455940.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-166 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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