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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold10290-snap-gene-0.10-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
bHLH |
Protein Properties |
Length: 406aa MW: 44283.5 Da PI: 5.0365 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold10290-snap-gene-0.10-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 49.5 | 7.8e-16 | 155 | 201 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq
maker-scaffold10290-snap-gene-0.10-mRNA-1 155 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 201
6*************************7.....5******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007623 | Biological Process | circadian rhythm |
GO:0009409 | Biological Process | response to cold |
GO:0010114 | Biological Process | response to red light |
GO:0010154 | Biological Process | fruit development |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0048440 | Biological Process | carpel development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MGDMYEYDKK ASCSSSTSAP QPQLQQLPLT SASAPDEISL FLHQILLRSS PSSSSSLMAN 60 TVKQGTSNVN PDRTCRSALL QDGISAVESL SGVSTGFGGV FLPNVSTSSL GGASENETDE 120 YDCESEEGLE ALVEDVPDKP VHPRGSSKRS RAAEVHNLSE KRRRSRINEK MKALQNLIPN 180 SNKTDKASML DEAIEYLKQL QLQVQMLTMR NGMSLHPMCL PGALQPIQFS QMRMDFGEEY 240 RPLHLDMTGT NPLNKETPLH DAFTLPNQCT ASNQPSVSNM SNIINSETSF GPIQAHLGPF 300 QLHTSSEDLC REDILRHQQS IVNHPDTNPV GGSPEIDMGA PASESLPFNT QASNLKDSGS 360 LQTCISGRER SEGVLLRNIE QNLILTPHLS MNTGRSASND DVKMEK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] - Moubayidin L,Ostergaard L
Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development. Curr. Biol., 2014. 24(22): p. 2743-8 [PMID:25455035] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] - Reyes-Olalde JI, et al.
The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genet., 2017. 13(4): p. e1006726 [PMID:28388635] - Wu M, et al.
SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385 [PMID:29966653]
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