PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10196-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 272aa    MW: 29814.9 Da    PI: 6.6979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10196-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.23e-15229263133
                                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                                                C++Cg ++  Tp++Rrgp+g+ktLCnaCGl++++k
  maker-scaffold10196-snap-gene-0.15-mRNA-1 229 CRHCGISEksTPMMRRGPEGPKTLCNACGLMWASK 263
                                                *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.4E-1085120IPR010399Tify domain
PROSITE profilePS5132014.11685120IPR010399Tify domain
PfamPF062002.0E-1291119IPR010399Tify domain
PfamPF062032.3E-16153195IPR010402CCT domain
PROSITE profilePS5101713.265153195IPR010402CCT domain
SMARTSM004013.6E-8223269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-10224266No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13227263IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.67E-11228263No hitNo description
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
PfamPF003204.1E-13229263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDGIHEDNVR MHMSEAQHPM QFQYEHHGLH HMSNGNVNGM DDNHHHDNGN VNGSGGGGNE  60
GYEGDVPSDA GNLSDNRSTM VDQAGGDCGD QLTLSFQGQV YVFDSVSPEK VQAVLLLLGG  120
REAPPNMPAI PATVHNNNQG ISGTPQRLSV PQRNASLARF REKRKERNFD KKIRYTVRKE  180
VALRMQRNKG QFTSSKSNND DSASAVTSWG SDESWGPDGN GSQHQEIVCR HCGISEKSTP  240
MMRRGPEGPK TLCNACGLMW ASKCTLPQIT FD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914483.11e-179GATA transcription factor 28-like isoform X2
SwissprotQ8H1G01e-122GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0R0IVL61e-134A0A0R0IVL6_SOYBN; Uncharacterized protein
TrEMBLA0A151RPA51e-134A0A151RPA5_CAJCA; GATA transcription factor 25
TrEMBLA0A445JID01e-134A0A445JID0_GLYSO; GATA transcription factor 28 isoform D
TrEMBLA0A4D6MHS71e-134A0A4D6MHS7_VIGUN; Pseudo-response regulator 1
STRINGGLYMA08G23720.21e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-105ZIM-like 1